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Conservation and divergence in modules of the transcriptional programs of human and mouse immune systems
View ORCID ProfileTal Shay, Vladimir Jojic, Or Zuk, Christophe Benoist, Daphne Koller, Aviv Regev, ImmGen Consortium, Paul Monach, Susan A. Shinton, Richard R. Hardy, Radu Jianu, David Laidlaw, Jim Collins, Roi Gazit, Brian S. Garrison, Derrick J. Rossi, Kavitha Narayan, Katelyn Sylvia, Joonsoo Kang, Anne Fletcher, Kutlu Elpek, Angelique Bel-lemare-Pelletier, Deepali Malhotra, Shannon Turley, Adam J. Best, Jamie Knell, Ananda Goldrath, Vladimir Jojic, Daphne Koller, Tal Shay, Aviv Regev, Nadia Cohen, Patrick Brennan, Michael Brenner, Taras Kreslavsky, Natalie A. Bezman, Joseph C. Sun, Charlie C. Kim, Lewis L. Lanier, Jennifer Miller, Brian Brown, Miriam Merad, Emmanuel L. Gautier, Claudia Jakubzick, Gwendalyn J. Randolph, Francis Kim, Tata Nageswara Rao, Amy Wagers, Tracy Heng, Michio Painter, Jeffrey Ericson, Scott Davis, Ayla Ergun, Michael Mingueneau, Diane Mathis, Christophe Benoist
doi: https://doi.org/10.1101/286211
Tal Shay
1Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
2Department of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva 8410501, Israel (current address)
Vladimir Jojic
3Department of Computer Science, Stanford University, 353 Serra Mall, Stanford, CA 94305-9010, USA.
4Calico Labs, 1170 Veterans Blvd, South San Francisco, CA 94080, USA (current address)
Or Zuk
1Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
5Department of Statistics, The Hebrew University of Jerusalem, Jerusalem 91905, Israel (current address)
Christophe Benoist
6Department of Microbiology and Immunology, Harvard Medical School, Boston, MA 02115, USA
Daphne Koller
3Department of Computer Science, Stanford University, 353 Serra Mall, Stanford, CA 94305-9010, USA.
Aviv Regev
1Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
7Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142, USA.
Paul Monach
aDepartment of Medicine, Boston University, Boston, MA 02118;
Susan A. Shinton
bFox Chase Cancer Center, Philadelphia, PA 19111;
Richard R. Hardy
bFox Chase Cancer Center, Philadelphia, PA 19111;
Radu Jianu
cComputer Science Department, Brown University, Providence, RI 02912;
David Laidlaw
cComputer Science Department, Brown University, Providence, RI 02912;
Jim Collins
dDepartment of Biomedical Engineering, Howard Hughes Medical Institute, Boston University, Boston, MA 02215;
Roi Gazit
eImmune Diseases Institute, Children’s Hospital, Boston, MA 02115;
Brian S. Garrison
eImmune Diseases Institute, Children’s Hospital, Boston, MA 02115;
Derrick J. Rossi
eImmune Diseases Institute, Children’s Hospital, Boston, MA 02115;
Kavitha Narayan
fDepartment of Pathology, University of Massachusetts Medical School, Worcester, MA 01655;
Katelyn Sylvia
fDepartment of Pathology, University of Massachusetts Medical School, Worcester, MA 01655;
Joonsoo Kang
fDepartment of Pathology, University of Massachusetts Medical School, Worcester, MA 01655;
Anne Fletcher
gDana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215;
Kutlu Elpek
gDana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215;
Angelique Bel-lemare-Pelletier
gDana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215;
Deepali Malhotra
gDana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215;
Shannon Turley
gDana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215;
Adam J. Best
hDivision of Biological Sciences, University of California at San Diego, La Jolla, CA 92093;
Jamie Knell
hDivision of Biological Sciences, University of California at San Diego, La Jolla, CA 92093;
Ananda Goldrath
hDivision of Biological Sciences, University of California at San Diego, La Jolla, CA 92093;
Vladimir Jojic
iComputer Science Department, Stanford University, Stanford, CA 94025;
Daphne Koller
iComputer Science Department, Stanford University, Stanford, CA 94025;
Tal Shay
jBroad Institute, Cambridge, MA 02141;
Aviv Regev
jBroad Institute, Cambridge, MA 02141;
Nadia Cohen
kDivision of Rheumatology, Immunology and Allergy, Brigham and Women’s Hospital, Boston, MA 02467;
Patrick Brennan
kDivision of Rheumatology, Immunology and Allergy, Brigham and Women’s Hospital, Boston, MA 02467;
Michael Brenner
kDivision of Rheumatology, Immunology and Allergy, Brigham and Women’s Hospital, Boston, MA 02467;
Taras Kreslavsky
kDivision of Rheumatology, Immunology and Allergy, Brigham and Women’s Hospital, Boston, MA 02467;
Natalie A. Bezman
lDepartment of Microbiology and Immunology, University of California, San Francisco, CA 94143;
Joseph C. Sun
lDepartment of Microbiology and Immunology, University of California, San Francisco, CA 94143;
Charlie C. Kim
lDepartment of Microbiology and Immunology, University of California, San Francisco, CA 94143;
Lewis L. Lanier
lDepartment of Microbiology and Immunology, University of California, San Francisco, CA 94143;
Jennifer Miller
mIcahn Medical Institute, Mount Sinai Hospital, New York, NY 10029;
Brian Brown
mIcahn Medical Institute, Mount Sinai Hospital, New York, NY 10029;
Miriam Merad
mIcahn Medical Institute, Mount Sinai Hospital, New York, NY 10029;
Emmanuel L. Gautier
mIcahn Medical Institute, Mount Sinai Hospital, New York, NY 10029;
nDepartment of Pathology and Immunology, Washington University, St. Louis, MO 63110;
Claudia Jakubzick
mIcahn Medical Institute, Mount Sinai Hospital, New York, NY 10029;
Gwendalyn J. Randolph
mIcahn Medical Institute, Mount Sinai Hospital, New York, NY 10029;
nDepartment of Pathology and Immunology, Washington University, St. Louis, MO 63110;
Francis Kim
oJoslin Diabetes Center, Boston, MA 02215; and
Tata Nageswara Rao
oJoslin Diabetes Center, Boston, MA 02215; and
Amy Wagers
oJoslin Diabetes Center, Boston, MA 02215; and
Tracy Heng
pDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115
Michio Painter
pDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115
Jeffrey Ericson
pDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115
Scott Davis
pDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115
Ayla Ergun
pDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115
Michael Mingueneau
pDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115
Diane Mathis
pDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115
Christophe Benoist
pDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115
Article usage
Posted May 08, 2018.
Conservation and divergence in modules of the transcriptional programs of human and mouse immune systems
Tal Shay, Vladimir Jojic, Or Zuk, Christophe Benoist, Daphne Koller, Aviv Regev, ImmGen Consortium, Paul Monach, Susan A. Shinton, Richard R. Hardy, Radu Jianu, David Laidlaw, Jim Collins, Roi Gazit, Brian S. Garrison, Derrick J. Rossi, Kavitha Narayan, Katelyn Sylvia, Joonsoo Kang, Anne Fletcher, Kutlu Elpek, Angelique Bel-lemare-Pelletier, Deepali Malhotra, Shannon Turley, Adam J. Best, Jamie Knell, Ananda Goldrath, Vladimir Jojic, Daphne Koller, Tal Shay, Aviv Regev, Nadia Cohen, Patrick Brennan, Michael Brenner, Taras Kreslavsky, Natalie A. Bezman, Joseph C. Sun, Charlie C. Kim, Lewis L. Lanier, Jennifer Miller, Brian Brown, Miriam Merad, Emmanuel L. Gautier, Claudia Jakubzick, Gwendalyn J. Randolph, Francis Kim, Tata Nageswara Rao, Amy Wagers, Tracy Heng, Michio Painter, Jeffrey Ericson, Scott Davis, Ayla Ergun, Michael Mingueneau, Diane Mathis, Christophe Benoist
bioRxiv 286211; doi: https://doi.org/10.1101/286211
Conservation and divergence in modules of the transcriptional programs of human and mouse immune systems
Tal Shay, Vladimir Jojic, Or Zuk, Christophe Benoist, Daphne Koller, Aviv Regev, ImmGen Consortium, Paul Monach, Susan A. Shinton, Richard R. Hardy, Radu Jianu, David Laidlaw, Jim Collins, Roi Gazit, Brian S. Garrison, Derrick J. Rossi, Kavitha Narayan, Katelyn Sylvia, Joonsoo Kang, Anne Fletcher, Kutlu Elpek, Angelique Bel-lemare-Pelletier, Deepali Malhotra, Shannon Turley, Adam J. Best, Jamie Knell, Ananda Goldrath, Vladimir Jojic, Daphne Koller, Tal Shay, Aviv Regev, Nadia Cohen, Patrick Brennan, Michael Brenner, Taras Kreslavsky, Natalie A. Bezman, Joseph C. Sun, Charlie C. Kim, Lewis L. Lanier, Jennifer Miller, Brian Brown, Miriam Merad, Emmanuel L. Gautier, Claudia Jakubzick, Gwendalyn J. Randolph, Francis Kim, Tata Nageswara Rao, Amy Wagers, Tracy Heng, Michio Painter, Jeffrey Ericson, Scott Davis, Ayla Ergun, Michael Mingueneau, Diane Mathis, Christophe Benoist
bioRxiv 286211; doi: https://doi.org/10.1101/286211
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