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16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection
Maxime Galan, Maria Razzauti, Emilie Bard, Maria Bernard, Carine Brouat, Nathalie Charbonnel, Alexandre Dehne-Garcia, Anne Loiseau, Caroline Tatard, Lucie Tamisier, Muriel Vayssier-Taussat, Hélène Vignes, Jean-François Cosson
doi: https://doi.org/10.1101/039826
Maxime Galan
1INRA, CBGP, Montferrier sur Lez, France
Maria Razzauti
1INRA, CBGP, Montferrier sur Lez, France
Emilie Bard
2INRA, EpiA, Clermont-Ferrand, France
Maria Bernard
3INRA, Sigenae, France
4INRA, GABI, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France
Carine Brouat
5Ird, CBGP, Montferrier sur Lez, France
Nathalie Charbonnel
1INRA, CBGP, Montferrier sur Lez, France
Alexandre Dehne-Garcia
1INRA, CBGP, Montferrier sur Lez, France
Anne Loiseau
1INRA, CBGP, Montferrier sur Lez, France
Caroline Tatard
1INRA, CBGP, Montferrier sur Lez, France
Lucie Tamisier
1INRA, CBGP, Montferrier sur Lez, France
Muriel Vayssier-Taussat
6INRA, Bipar, Maisons-Alfort, France
Hélène Vignes
7CIRAD, AGAP, Montpellier, France
Jean-François Cosson
1INRA, CBGP, Montferrier sur Lez, France
6INRA, Bipar, Maisons-Alfort, France
Article usage
Posted February 27, 2016.
16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection
Maxime Galan, Maria Razzauti, Emilie Bard, Maria Bernard, Carine Brouat, Nathalie Charbonnel, Alexandre Dehne-Garcia, Anne Loiseau, Caroline Tatard, Lucie Tamisier, Muriel Vayssier-Taussat, Hélène Vignes, Jean-François Cosson
bioRxiv 039826; doi: https://doi.org/10.1101/039826
16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection
Maxime Galan, Maria Razzauti, Emilie Bard, Maria Bernard, Carine Brouat, Nathalie Charbonnel, Alexandre Dehne-Garcia, Anne Loiseau, Caroline Tatard, Lucie Tamisier, Muriel Vayssier-Taussat, Hélène Vignes, Jean-François Cosson
bioRxiv 039826; doi: https://doi.org/10.1101/039826
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