New Results
Alignathon: A competitive assessment of whole genome alignment methods
Dent Earl, Ngan Nguyen, Glenn Hickey, Robert S. Harris, Stephen Fitzgerald, Kathryn Beal, Igor Seledtsov, Vladimir Molodtsov, Brian J. Raney, Hiram Clawson, Jaebum Kim, Carsten Kemena, Jia-Ming Chang, Ionas Erb, Alexander Poliakov, Minmei Hou, Javier Herrero, Victor Solovyev, Aaron E. Darling, Jian Ma, Cedric Notredame, Michael Brudno, Inna Dubchak, David Haussler, Benedict Paten
doi: https://doi.org/10.1101/003285
Dent Earl
1Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA
2Biomolecular Engineering Department, University of California Santa Cruz, CA, USA
Ngan Nguyen
1Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA
2Biomolecular Engineering Department, University of California Santa Cruz, CA, USA
Glenn Hickey
1Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA
2Biomolecular Engineering Department, University of California Santa Cruz, CA, USA
Robert S. Harris
3Department of Biology, The Pennsylvania State University, PA, USA
Stephen Fitzgerald
4EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK
Kathryn Beal
4EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK
Igor Seledtsov
5Softberry Inc., USA
Vladimir Molodtsov
5Softberry Inc., USA
Brian J. Raney
1Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA
Hiram Clawson
1Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA
Jaebum Kim
6Department of Animal Biotechnology, Konkuk University, Seoul 143-701, Korea
Carsten Kemena
7Centre For Genomic Regulation (CRG), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
8Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain
9Westfalian Wilhelms University, Institute of Evolution and Biodiversity, Huefferstr. 1, 48149 Muenster, Germany
Jia-Ming Chang
7Centre For Genomic Regulation (CRG), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
8Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain
10Institute of Human Genetics, 141 rue de la Cardonille, 34396 Montpellier, France
Ionas Erb
7Centre For Genomic Regulation (CRG), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
8Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain
Alexander Poliakov
11Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA
Minmei Hou
12Department of Computer Science, Northern Illinois University, USA
Javier Herrero
4EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK
13The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
Victor Solovyev
5Softberry Inc., USA
Aaron E. Darling
14ithree Institute, University of Technology Sydney, Sydney, Australia
Jian Ma
15Department of Bioengineering and Institute for Genomic Biology, University of Illinois at Urbana-Champaign, USA
Cedric Notredame
7Centre For Genomic Regulation (CRG), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
8Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain
Michael Brudno
16Department of Computer Science and the Donnelly Centre, University of Toronto, 10 King’s College Rd, Toronto, ON M5S 3G4, Canada
17Centre for Computational Medicine and the Genetics and Genome Biology Program, Hospital for Sick Children, 555 University Avenue, Toronto, ON M5G 1X8, Canada
Inna Dubchak
11Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA
18Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94710, USA
David Haussler
1Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA
2Biomolecular Engineering Department, University of California Santa Cruz, CA, USA
19Howard Hughes Medical Institute, Bethesda, MD, USA
Benedict Paten
1Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA
2Biomolecular Engineering Department, University of California Santa Cruz, CA, USA
Article usage
Posted March 10, 2014.
Alignathon: A competitive assessment of whole genome alignment methods
Dent Earl, Ngan Nguyen, Glenn Hickey, Robert S. Harris, Stephen Fitzgerald, Kathryn Beal, Igor Seledtsov, Vladimir Molodtsov, Brian J. Raney, Hiram Clawson, Jaebum Kim, Carsten Kemena, Jia-Ming Chang, Ionas Erb, Alexander Poliakov, Minmei Hou, Javier Herrero, Victor Solovyev, Aaron E. Darling, Jian Ma, Cedric Notredame, Michael Brudno, Inna Dubchak, David Haussler, Benedict Paten
bioRxiv 003285; doi: https://doi.org/10.1101/003285
Alignathon: A competitive assessment of whole genome alignment methods
Dent Earl, Ngan Nguyen, Glenn Hickey, Robert S. Harris, Stephen Fitzgerald, Kathryn Beal, Igor Seledtsov, Vladimir Molodtsov, Brian J. Raney, Hiram Clawson, Jaebum Kim, Carsten Kemena, Jia-Ming Chang, Ionas Erb, Alexander Poliakov, Minmei Hou, Javier Herrero, Victor Solovyev, Aaron E. Darling, Jian Ma, Cedric Notredame, Michael Brudno, Inna Dubchak, David Haussler, Benedict Paten
bioRxiv 003285; doi: https://doi.org/10.1101/003285
Subject Area
Subject Areas
- Biochemistry (11760)
- Bioengineering (8760)
- Bioinformatics (29216)
- Biophysics (14988)
- Cancer Biology (12105)
- Cell Biology (17417)
- Clinical Trials (138)
- Developmental Biology (9430)
- Ecology (14190)
- Epidemiology (2067)
- Evolutionary Biology (18317)
- Genetics (12246)
- Genomics (16807)
- Immunology (11876)
- Microbiology (28108)
- Molecular Biology (11607)
- Neuroscience (61020)
- Paleontology (452)
- Pathology (1872)
- Pharmacology and Toxicology (3238)
- Physiology (4966)
- Plant Biology (10429)
- Synthetic Biology (2888)
- Systems Biology (7341)
- Zoology (1651)