MicroScope: real-time statistical analytics platform and visualization engine for gene expression heatmaps
BB Khomtchouk, V Dargis-Robinson, JR Hennessy… - bioRxiv, 2015 - biorxiv.org
Motivation Large gene expression heatmaps (≥ 200 genes) are difficult to read: while
general expression level patterns may be observed via hierarchical clustering, the identities of …
general expression level patterns may be observed via hierarchical clustering, the identities of …
[PDF][PDF] MicroScope: magnifying interactive gene expression heatmaps with RShiny and JavaScript
BB Khomtchouk, V Dargis-Robinson, JR Hennessy… - bioRxiv, 2015 - scholar.archive.org
Motivation: Large gene expression heatmaps (≥ 200 genes) are difficult to read: while
general expression level patterns may be observed via hierarchical clustering, the identities of …
general expression level patterns may be observed via hierarchical clustering, the identities of …
[PDF][PDF] MicroScope: comprehensive genome analysis software suite for gene expression heatmaps
BB Khomtchouk, V Dargis-Robinson… - …, 2016 - pdfs.semanticscholar.org
We propose a user-friendly, comprehensive genome software suite for the interactive
visualization and analysis of gene expression heatmaps, including integrated features to support: …
visualization and analysis of gene expression heatmaps, including integrated features to support: …
[HTML][HTML] MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps
BB Khomtchouk, JR Hennessy, C Wahlestedt - BMC bioinformatics, 2016 - Springer
Background Heatmaps are an indispensible visualization tool for examining large-scale
snapshots of genomic activity across various types of next-generation sequencing datasets. …
snapshots of genomic activity across various types of next-generation sequencing datasets. …
[HTML][HTML] KSHV-induced ligand mediated activation of PDGF receptor-alpha drives Kaposi's sarcomagenesis
LE Cavallin, Q Ma, J Naipauer, S Gupta… - PLoS …, 2018 - journals.plos.org
… We would like to thank Santas Rosario, Darlah Lopez Rodriguez and Vytas Dargis-Robinson
for their technical support. We are thankful to Drs Jae Jung, Pinghui Feng and Kevin …
for their technical support. We are thankful to Drs Jae Jung, Pinghui Feng and Kevin …
[HTML][HTML] PDGFRA defines the mesenchymal stem cell Kaposi's sarcoma progenitors by enabling KSHV oncogenesis in an angiogenic environment
J Naipauer, S Rosario, S Gupta, C Premer… - PLoS …, 2019 - journals.plos.org
Kaposi’s sarcoma (KS) is an AIDS-defining cancer caused by the KS-associated herpesvirus
(KSHV). Unanswered questions regarding KS are its cellular ontology and the conditions …
(KSHV). Unanswered questions regarding KS are its cellular ontology and the conditions …
[CITATION][C] GABA-B-Mediated Inhibition Contributes to Propofol-Induced Depression of Hippocampal Responses
V Dargis-Robinson, B MacIver
[CITATION][C] GABA-A Fast Synapses Contribute the Vast Majority to Propofol-Induced Depression of CA1 Neurons
B MacIver, V Dargis-Robinson
[CITATION][C] GABA-B Receptors Located on CA1 Dendrites Appear To Contribute Most to Propofol-Induced Depression
B MacIver, Y Na, V Dargis-Robinson
[CITATION][C] Isoflurane Depresses Synaptic Transmission by Enhancing GABA-B Receptor-Mediated Inhibition
B MacIver, EL Velasco, V Dargis-Robinson