User profiles for V. V. Vagin

Vasily Vagin

CSHL
Verified email at cshl.edu
Cited by 4977

Refinement of macromolecular structures by the maximum-likelihood method

GN Murshudov, AA Vagin, EJ Dodson - … Crystallographica Section D …, 1997 - scripts.iucr.org
This paper reviews the mathematical basis of maximum likelihood. The likelihood function
for macromolecular structures is extended to include prior phase information and …

The gastric HK-ATPase: structure, function, and inhibition

JM Shin, K Munson, O Vagin, G Sachs - Pflügers Archiv-European Journal …, 2009 - Springer
The gastric H,K-ATPase, a member of the P 2 -type ATPase family, is the integral membrane
protein responsible for gastric acid secretion. It is an α,β-heterodimeric enzyme that …

Role of N-glycosylation in trafficking of apical membrane proteins in epithelia

O Vagin, JA Kraut, G Sachs - American Journal of …, 2009 - journals.physiology.org
Polarized distribution of plasma membrane transporters and receptors in epithelia is essential
for vectorial functions of epithelia. This polarity is maintained by sorting of membrane …

A vaginal plethysmograph system.

G Sintchak, JH Geer - Psychophysiology, 1975 - search.ebscohost.com
… Sitice the vaginal tissue is not directly l)etween the lamp and phot(KeII, the light source …
vaginal wall tissue and is reflected to the phototell surface which is in direct contact with the vagin

MOLREP: an automated program for molecular replacement

A Vagin, A Teplyakov - Journal of applied crystallography, 1997 - scripts.iucr.org
MOLREP is an automated program for molecular replacement which utilizes effective new
approaches in data processing and rotational and translational searching. These include an …

[HTML][HTML] Overview of the CCP4 suite and current developments

…, EA Potterton, HR Powell, RJ Read, A Vagin… - … Section D: Biological …, 2011 - scripts.iucr.org
The CCP4 (Collaborative Computational Project, Number 4) software suite is a collection of
programs and associated data and software libraries which can be used for macromolecular …

Molecular replacement with MOLREP

A Vagin, A Teplyakov - Acta Crystallographica Section D: Biological …, 2010 - scripts.iucr.org
MOLREP is an automated program for molecular replacement that utilizes a number of
original approaches to rotational and translational search and data preparation. Since the first …

[HTML][HTML] REFMAC5 for the refinement of macromolecular crystal structures

…, RA Nicholls, MD Winn, F Long, AA Vagin - … Section D: Biological …, 2011 - scripts.iucr.org
This paper describes various components of the macromolecular crystallographic refinement
program REFMAC5, which is distributed as part of the CCP4 suite. REFMAC5 utilizes …

A distinct small RNA pathway silences selfish genetic elements in the germline

VV Vagin, A Sigova, C Li, H Seitz, V Gvozdev… - Science, 2006 - science.org
In the Drosophila germline, repeat-associated small interfering RNAs (rasiRNAs) ensure
genomic stability by silencing endogenous selfish genetic elements such as retrotransposons …

[HTML][HTML] REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use

AA Vagin, RA Steiner, AA Lebedev… - … Section D: Biological …, 2004 - scripts.iucr.org
One of the most important aspects of macromolecular structure refinement is the use of prior
chemical knowledge. Bond lengths, bond angles and other chemical properties are used in …