User profiles for V. P. Brendel

Volker Brendel

Professor of Biology and Computer Science, Indiana University
Verified email at indiana.edu
Cited by 10323

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction

…, DS Standage, DF Voytas, VP Brendel… - Nucleic acids …, 2012 - academic.oup.com
Transcription activator-like (TAL) effectors are repeat-containing proteins used by plant
pathogenic bacteria to manipulate host gene expression. Repeats are polymorphic and …

[HTML][HTML] Single nucleotide polymorphisms of human STING can affect innate immune response to cyclic dinucleotides

G Yi, VP Brendel, C Shu, P Li, S Palanathan… - PloS one, 2013 - journals.plos.org
The STING (stimulator of interferon genes) protein can bind cyclic dinucleotides to activate
the production of type I interferons and inflammatory cytokines. The cyclic dinucleotides can …

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp

…, JM Dow, RV Sonti, S Tsuge, VP Brendel… - Journal of …, 2011 - Am Soc Microbiol
Xanthomonas is a large genus of bacteria that collectively cause disease on more than 300
plant species. The broad host range of the genus contrasts with stringent host and tissue …

Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect

…, KM Glastad, AJ Severin, VP Brendel… - Molecular …, 2016 - Wiley Online Library
Comparative genomics of social insects has been intensely pursued in recent years with the
goal of providing insights into the evolution of social behaviour and its underlying genomic …

Genome-Wide Distribution of Transposed Dissociation Elements in Maize

…, E Unger-Wallace, M Muszynski, VP Brendel… - The Plant …, 2010 - academic.oup.com
The maize (Zea mays) transposable element Dissociation (Ds) was mobilized for large-scale
genome mutagenesis and to study its endogenous biology. Starting from a single donor …

[PDF][PDF] The Xa7 resistance gene guards the rice susceptibility gene SWEET14 against exploitation by the bacterial blight pathogen

…, RT Raborn, FF White, VP Brendel… - Plant …, 2021 - cell.com
Many plant disease resistance (R) genes function specifically in reaction to the presence of
cognate effectors from a pathogen. Xanthomonas oryzae pathovar oryzae (Xoo) uses …

Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq

RA Policastro, RT Raborn, VP Brendel… - Genome …, 2020 - genome.cshlp.org
Accurate mapping of transcription start sites (TSSs) is key for understanding transcriptional
regulation. However, current protocols for genome-wide TSS profiling are laborious and/or …

Changes in gene DNA methylation and expression networks accompany caste specialization and age‐related physiological changes in a social insect

C Morandin, VP Brendel, L Sundström… - Molecular …, 2019 - Wiley Online Library
Social insects provide systems for studying epigenetic regulation of phenotypes, particularly
with respect to differentiation of reproductive and worker castes, which typically arise from a …

Discovery and expression analysis of alternative splicing events conserved among plant SR proteins

…, FU Battistuzzi, W Mei, VP Brendel… - Molecular biology …, 2014 - academic.oup.com
The high frequency of alternative splicing among the serine/arginine-rich (SR) family of proteins
in plants has been linked to important roles in gene regulation during development and …

Regional mutagenesis using Dissociation in maize

…, R Weeks, E Vollbrecht, J Duvick, VP Brendel… - Methods, 2009 - Elsevier
We describe genetic screens, molecular methods and web resources newly available to utilize
Dissociation (Ds) as an insertional mutagen in maize. Over 1700 Ds elements have been …