[PDF][PDF] Sugar synthesis from CO2 in Escherichia coli
Can a heterotrophic organism be evolved to synthesize biomass from CO 2 directly? So far,
non-native carbon fixation in which biomass precursors are synthesized solely from CO 2 …
non-native carbon fixation in which biomass precursors are synthesized solely from CO 2 …
Promoters maintain their relative activity levels under different growth conditions
…, O Zackay, M Lotan‐Pompan, U Barenholz… - Molecular systems …, 2013 - embopress.org
Most genes change expression levels across conditions, but it is unclear which of these
changes represents specific regulation and what determines their quantitative degree. Here, we …
changes represents specific regulation and what determines their quantitative degree. Here, we …
Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements
…, A Flamholz, K Tummler, U Barenholz… - Proceedings of the …, 2016 - National Acad Sciences
Turnover numbers, also known as k cat values, are fundamental properties of enzymes.
However, k cat data are scarce and measured in vitro, thus may not faithfully represent the in …
However, k cat data are scarce and measured in vitro, thus may not faithfully represent the in …
Spanning high-dimensional expression space using ribosome-binding site combinatorics
…, A Bar-Even, A Levin-Karp, U Barenholz… - Nucleic acids …, 2013 - academic.oup.com
Protein levels are a dominant factor shaping natural and synthetic biological systems. Although
proper functioning of metabolic pathways relies on precise control of enzyme levels, the …
proper functioning of metabolic pathways relies on precise control of enzyme levels, the …
Quantifying Translational Coupling in E. coli Synthetic Operons Using RBS Modulation and Fluorescent Reporters
A Levin-Karp, U Barenholz, T Bareia… - ACS synthetic …, 2013 - ACS Publications
Translational coupling is the interdependence of translation efficiency of neighboring genes
encoded within an operon. The degree of coupling may be quantified by measuring how the …
encoded within an operon. The degree of coupling may be quantified by measuring how the …
Design principles of autocatalytic cycles constrain enzyme kinetics and force low substrate saturation at flux branch points
10.7554/eLife.20667.001 A set of chemical reactions that require a metabolite to synthesize
more of that metabolite is an autocatalytic cycle. Here, we show that most of the reactions in …
more of that metabolite is an autocatalytic cycle. Here, we show that most of the reactions in …
[HTML][HTML] The genetic basis for the adaptation of E. coli to sugar synthesis from CO2
…, Y Zohar, DG Wernick, A Savidor, U Barenholz… - Nature …, 2017 - nature.com
Understanding the evolution of a new metabolic capability in full mechanistic detail is
challenging, as causative mutations may be masked by non-essential "hitchhiking" mutations …
challenging, as causative mutations may be masked by non-essential "hitchhiking" mutations …
[HTML][HTML] A minimalistic resource allocation model to explain ubiquitous increase in protein expression with growth rate
Most proteins show changes in level across growth conditions. Many of these changes seem
to be coordinated with the specific growth rate rather than the growth environment or the …
to be coordinated with the specific growth rate rather than the growth environment or the …
[PDF][PDF] Improved approximation for min-sum vertex cover
… E-mail: uri.barenholz@gmail.com. … Let G1 be a graph on 9 vertices u, v1,w1,...,v4,w4,
in which vertex u is connected by a star to vertices v1,...,v4, and for every 1 ≤ i ≤ 4, vi is …
in which vertex u is connected by a star to vertices v1,...,v4, and for every 1 ≤ i ≤ 4, vi is …
[PDF][PDF] Increased concentration of proteins with growth rate as a result of passive resource redistribution
Most proteins show changes in level across growth conditions. Many of these changes seem
to be coordinated with the growth rate rather than the specific environment or the protein …
to be coordinated with the growth rate rather than the specific environment or the protein …