[PDF][PDF] Sugar synthesis from CO2 in Escherichia coli

…, S Gleizer, E Noor, Y Zohar, E Herz, U Barenholz… - Cell, 2016 - cell.com
Can a heterotrophic organism be evolved to synthesize biomass from CO 2 directly? So far,
non-native carbon fixation in which biomass precursors are synthesized solely from CO 2 …

Promoters maintain their relative activity levels under different growth conditions

…, O Zackay, M Lotan‐Pompan, U Barenholz… - Molecular systems …, 2013 - embopress.org
Most genes change expression levels across conditions, but it is unclear which of these
changes represents specific regulation and what determines their quantitative degree. Here, we …

Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements

…, A Flamholz, K Tummler, U Barenholz… - Proceedings of the …, 2016 - National Acad Sciences
Turnover numbers, also known as k cat values, are fundamental properties of enzymes.
However, k cat data are scarce and measured in vitro, thus may not faithfully represent the in …

Spanning high-dimensional expression space using ribosome-binding site combinatorics

…, A Bar-Even, A Levin-Karp, U Barenholz… - Nucleic acids …, 2013 - academic.oup.com
Protein levels are a dominant factor shaping natural and synthetic biological systems. Although
proper functioning of metabolic pathways relies on precise control of enzyme levels, the …

Quantifying Translational Coupling in E. coli Synthetic Operons Using RBS Modulation and Fluorescent Reporters

A Levin-Karp, U Barenholz, T Bareia… - ACS synthetic …, 2013 - ACS Publications
Translational coupling is the interdependence of translation efficiency of neighboring genes
encoded within an operon. The degree of coupling may be quantified by measuring how the …

Design principles of autocatalytic cycles constrain enzyme kinetics and force low substrate saturation at flux branch points

U Barenholz, D Davidi, E Reznik, Y Bar-On… - Elife, 2017 - elifesciences.org
10.7554/eLife.20667.001 A set of chemical reactions that require a metabolite to synthesize
more of that metabolite is an autocatalytic cycle. Here, we show that most of the reactions in …

[HTML][HTML] The genetic basis for the adaptation of E. coli to sugar synthesis from CO2

…, Y Zohar, DG Wernick, A Savidor, U Barenholz… - Nature …, 2017 - nature.com
Understanding the evolution of a new metabolic capability in full mechanistic detail is
challenging, as causative mutations may be masked by non-essential "hitchhiking" mutations …

[HTML][HTML] A minimalistic resource allocation model to explain ubiquitous increase in protein expression with growth rate

U Barenholz, L Keren, E Segal, R Milo - PLoS One, 2016 - journals.plos.org
Most proteins show changes in level across growth conditions. Many of these changes seem
to be coordinated with the specific growth rate rather than the growth environment or the …

[PDF][PDF] Improved approximation for min-sum vertex cover

U Barenholz, U Feige, D Peleg - … . wisdom. weizmann. ac …, 2006 - wisdom.weizmann.ac.il
… E-mail: uri.barenholz@gmail.com. … Let G1 be a graph on 9 vertices u, v1,w1,...,v4,w4,
in which vertex u is connected by a star to vertices v1,...,v4, and for every 1 ≤ i ≤ 4, vi is …

[PDF][PDF] Increased concentration of proteins with growth rate as a result of passive resource redistribution

U Barenholz, L Keren, R Milo - bioRxiv, 2015 - pdfs.semanticscholar.org
Most proteins show changes in level across growth conditions. Many of these changes seem
to be coordinated with the growth rate rather than the specific environment or the protein …