User profiles for T. Vinar

Tomas Vinar

Comenius University in Bratislava
Verified email at fmph.uniba.sk
Cited by 8429

Evolutionary and biomedical insights from the rhesus macaque genome

…, A Karimpour-Fard, YH Kim, JR Pollack, T Vinar… - science, 2007 - science.org
The rhesus macaque (Macaca mulatta) is an abundant primate species that diverged from
the ancestors of Homo sapiens about 25 million years ago. Because they are genetically and …

[HTML][HTML] The sequence and de novo assembly of the giant panda genome

…, S Zhao, F Tian, X Wang, H Wang, L Xu, X Liu, T Vinar… - Nature, 2010 - nature.com
Using next-generation sequencing technology alone, we have successfully generated and
assembled a draft sequence of the giant panda genome. The assembled contigs (2.25 …

[HTML][HTML] Comparative and demographic analysis of orang-utan genomes

…, XS Puente, GR Ordońez, C López-Otín, T Vinar… - Nature, 2011 - nature.com
‘Orang-utan’ is derived from a Malay term meaning ‘man of the forest’ and aptly describes the
southeast Asian great apes native to Sumatra and Borneo. The orang-utan species, Pongo …

[HTML][HTML] Patterns of positive selection in six mammalian genomes

C Kosiol, T Vinař, RR da Fonseca, MJ Hubisz… - PLoS …, 2008 - journals.plos.org
… γ, defined as γ = max t γ t , where γ t is the squared cosine of the angle … t (see [17]). In
defining genes as tissue specific for tissue t we required γ t >0.25 and γ t′ <0.125 for all t′ ≠ t

[HTML][HTML] The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

…, PQ Spinks, KB Storey, N Thane, T Vinar… - Genome biology, 2013 - Springer
Background We describe the genome of the western painted turtle, Chrysemys picta bellii,
one of the most widespread, abundant, and well-studied turtles. We place the genome into a …

[HTML][HTML] Convergent evolution of the genomes of marine mammals

AD Foote, Y Liu, GWC Thomas, T Vinař, J Alföldi… - Nature …, 2015 - nature.com
… rosmarus divergens) and a Florida subspecies of the West Indian manatee (T. manatus
latirostris). The female killer whale 'Morgan' stranded on the coast of the Netherlands and was …

[HTML][HTML] Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

…, KM Robertson, VC Sousa, FG Vieira, T Vinař… - Nature …, 2016 - nature.com
… , and used the classical transformation by Cavalli-Sforza 66 , T=−log(1−F ST ) to obtain
estimates of the population divergence time T in units scaled by the population size. For each 50-…

[HTML][HTML] The genome of the hydatid tapeworm Echinococcus granulosus

…, B Shi, H Wen, R Lin, MK Jones, B Brejova, T Vinar… - Nature …, 2013 - nature.com
Cystic echinococcosis (hydatid disease), caused by the tapeworm E. granulosus, is responsible
for considerable human morbidity and mortality. This cosmopolitan disease is difficult to …

[HTML][HTML] DeepNano: deep recurrent neural networks for base calling in MinION nanopore reads

V Boža, B Brejová, T Vinař - PloS one, 2017 - journals.plos.org
The MinION device by Oxford Nanopore produces very long reads (reads over 100 kBp
were reported); however it suffers from high sequencing error rate. We present an open-source …

Evolution of linear chromosomes and multipartite genomes in yeast mitochondria

…, D Fricova, J Kovac, B Brejova, T Vinar… - Nucleic acids …, 2011 - academic.oup.com
… with telomeric hairpins (t-hairpins) coexist … (t-arrays) of tandem repeats and multimeric
minicircles derived exclusively from the sequence of mitochondrial telomeres (telomeric circles, t-…