User profiles for T. Tatarinova

Tatiana V. Tatarinova

Fletcher Jones Endowed Chair in Computational Biology, University of LaVerne
Verified email at laverne.edu
Cited by 3198

Artificial microRNAs (amiRNAs) engineering–On how microRNA-based silencing methods have affected current plant silencing research

…, ÁL Pérez-Quintero, M Hassan, TV Tatarinova… - Biochemical and …, 2011 - Elsevier
In recent years, endogenous microRNAs have been described as important regulators of
gene expression in eukaryotes. Artificial microRNAs (amiRNAs) represent a recently …

[HTML][HTML] Insights into corn genes derived from large-scale cDNA sequencing

…, S Freidin, ME Troukhan, TV Tatarinova… - Plant molecular …, 2009 - Springer
We present a large portion of the transcriptome of Zea mays, including ESTs representing
484,032 cDNA clones from 53 libraries and 36,565 fully sequenced cDNA clones, out of which …

[HTML][HTML] DNA barcoding the native flowering plants and conifers of Wales

…, H Davies, J Allainguillaume, S Ronca, T Tatarinova… - PloS one, 2012 - journals.plos.org
We present the first national DNA barcode resource that covers the native flowering plants
and conifers for the nation of Wales (1143 species). Using the plant DNA barcode markers …

[HTML][HTML] Geographic population structure analysis of worldwide human populations infers their biogeographical origins

E Elhaik, T Tatarinova, D Chebotarev, IS Piras… - Nature …, 2014 - nature.com
The search for a method that utilizes biological information to predict humans’ place of origin
has occupied scientists for millennia. Over the past four decades, scientists have employed …

Features of Arabidopsis Genes and Genome Discovered using Full-length cDNAs

…, ME Troukhan, VV Brover, T Tatarinova… - Plant molecular …, 2006 - Springer
… There are clear peaks of A and T in the promoter region at about 30 nucleotides upstream
of the transcription start site (TATA box; Figure 3A) but not all genes posses canonical TATA …

[HTML][HTML] GC3 biology in corn, rice, sorghum and other grasses

TV Tatarinova, NN Alexandrov, JB Bouck… - BMC genomics, 2010 - Springer
Background The third, or wobble, position in a codon provides a high degree of possible
degeneracy and is an elegant fault-tolerance mechanism. Nucleotide biases between …

Structural variants in 3000 rice genomes

…, RA Wing, KL McNally, T Tatarinova… - Genome …, 2019 - genome.cshlp.org
Investigation of large structural variants (SVs) is a challenging yet important task in
understanding trait differences in highly repetitive genomes. Combining different bioinformatic …

Two general methods for population pharmacokinetic modeling: non-parametric adaptive grid and non-parametric Bayesian

T Tatarinova, M Neely, J Bartroff, M van Guilder… - … of pharmacokinetics and …, 2013 - Springer
… Hence, we consider a one compartment model with T = 5 or 6 serum measurements (specific
for each patient) for a population of N = 35 subjects. In this case \( \theta = (\kappa ,V); \) …

Toward high-resolution population genomics using archaeological samples

…, Y Nikolsky, A Baranova, E Elhaik, TV Tatarinova - DNA …, 2016 - academic.oup.com
… They also found G and T overrepresented at the 5′ and 3′ ends of break points and …
One estimation strategy for base modification compares the percentage of T and A calls at ultra-…

[HTML][HTML] Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry

…, IV Travinsky, M Tříska, P Tříska, TV Tatarinova - Scientific reports, 2016 - nature.com
… In order to mitigate the effect of ancient DNA deamination and the resulting C to T substitutions
60 , we constructed another version of the genome-based dataset, with all CT and AG …