User profiles for T. Sharpton
Thomas J. SharptonAssociate Professor, Oregon State University Verified email at oregonstate.edu Cited by 18431 |
[HTML][HTML] Reporting guidelines for human microbiome research: the STORMS checklist
The particularly interdisciplinary nature of human microbiome research makes the organization
and reporting of results spanning epidemiology, biology, bioinformatics, translational …
and reporting of results spanning epidemiology, biology, bioinformatics, translational …
[HTML][HTML] An introduction to the analysis of shotgun metagenomic data
TJ Sharpton - Frontiers in plant science, 2014 - frontiersin.org
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host …
and clarified the relationship between host-associated microbial communities and host …
[HTML][HTML] Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities
…, CR Armour, C Hu, M Mei, C Tian, TJ Sharpton… - Frontiers in …, 2019 - frontiersin.org
… of T may in … of T in a person’s gut microbiome only if it already contains T. It is also possible
that elevated levels of M are associated with increasing a person’s chance of exposure to T …
that elevated levels of M are associated with increasing a person’s chance of exposure to T …
[HTML][HTML] Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
ZSL Foster, TJ Sharpton… - PLoS computational …, 2017 - journals.plos.org
Community-level data, the type generated by an increasing number of metabarcoding
studies, is often graphed as stacked bar charts or pie graphs that use color to represent taxa. …
studies, is often graphed as stacked bar charts or pie graphs that use color to represent taxa. …
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
While most Ascomycetes tend to associate principally with plants, the dimorphic fungi
Coccidioides immitis and Coccidioides posadasii are primary pathogens of immunocompetent …
Coccidioides immitis and Coccidioides posadasii are primary pathogens of immunocompetent …
[HTML][HTML] A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter
Obesity is an important and intractable public health problem. In addition to the well-known
risk factors of behavior, diet, and genetics, gut microbial communities were recently identified …
risk factors of behavior, diet, and genetics, gut microbial communities were recently identified …
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
We have sequenced the genomes of 18 isolates of the closely related human pathogenic
fungi Coccidioides immitis and Coccidioides posadasii to more clearly elucidate population …
fungi Coccidioides immitis and Coccidioides posadasii to more clearly elucidate population …
Global marine bacterial diversity peaks at high latitudes in winter
… S Riesenfeld, B Dorazio, J Eisen, JC Thrash, JA Gilbert, N Fierer, G Howard and VL Sharpton
provided valuable insight and discussion. This research was funded by Gordon and Betty …
provided valuable insight and discussion. This research was funded by Gordon and Betty …
The influence of ethnicity and geography on human gut microbiome composition
CA Gaulke, TJ Sharpton - Nature medicine, 2018 - nature.com
… However, it isn’t clear what aspects of ethnicity, whether culturally related activities or
genetics, underlie its observed association with the microbiome. … Sharpton … Gaulke, CA …
genetics, underlie its observed association with the microbiome. … Sharpton … Gaulke, CA …
[HTML][HTML] Profile hidden Markov models for the detection of viruses within metagenomic sequence data
… identified derived from bacterial genomes that weren’t well represented in NT. In the Santeuil
… methods for identifying novel viruses that don’t strictly rely on homology to known viruses. …
… methods for identifying novel viruses that don’t strictly rely on homology to known viruses. …