User profiles for T. Lönnberg

Tapio Lönnberg

University of Turku
Verified email at utu.fi
Cited by 3056

[HTML][HTML] A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications

A Haque, J Engel, SA Teichmann, T Lönnberg - Genome medicine, 2017 - Springer
… scRNA-seq is also ideal for examination of single cells where each one is essentially unique,
such as individual T lymphocytes expressing highly diverse T-cell receptors [20], neurons …

Single‐cell technologies are revolutionizing the approach to rare cells

V Proserpio, T Lönnberg - Immunology and cell biology, 2016 - Wiley Online Library
… These cells are crucial in purging autoreactive T cells and promoting development of
thymic regulatory T cells by ‘projecting an immunological self shadow’ through systematic …

Microanatomy of the human atherosclerotic plaque by single-cell transcriptomics

…, GJ De Borst, E Aavik, T Lönnberg… - Circulation …, 2020 - Am Heart Assoc
… By analyzing the CD4 + T cells in a clustering-independent method by selecting all cells that
… of single T H -specific transcription factors, we find that a large population of T cells did not …

Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria

T Lönnberg, V Svensson, KR James… - Science …, 2017 - science.org
… trajectories of T H 1 and T FH (T follicular helper) cells during … T cell receptor sequences, we
first demonstrated that T H 1/T … associated with T H 1 or T FH fates and demonstrated a T cell…

[PDF][PDF] Phosphodiester models for cleavage of nucleic acids

…, T Lönnberg, H Lönnberg - Beilstein journal of organic …, 2018 - beilstein-journals.org
Nucleic acids that store and transfer biological information are polymeric diesters of phosphoric
acid. Cleavage of the phosphodiester linkages by protein enzymes, nucleases, is one of …

T cell fate and clonality inference from single-cell transcriptomes

MJT Stubbington, T Lönnberg, V Proserpio, S Clare… - Nature …, 2016 - nature.com
We developed TraCeR, a computational method to reconstruct full-length, paired T cell
receptor (TCR) sequences from T lymphocyte single-cell RNA sequence data. TraCeR links T

[HTML][HTML] Single-cell characterization of anti–LAG-3 and anti–PD-1 combination treatment in patients with melanoma

…, H Kasanen, K Peltola, T Lönnberg… - The Journal of …, 2023 - Am Soc Clin Investig
… The highest LAG3 expression was noted in NK cells, Tregs, and CD8 + T cells, and these cell
… , and their expanding CD8 + T cell clones gained a more cytotoxic and NK-like phenotype. …

[PDF][PDF] Single-cell survey of human lymphatics unveils marked endothelial cell heterogeneity and mechanisms of homing for neutrophils

…, J Pan, KF Brulois, R Kaukonen, T Lönnberg… - Immunity, 2019 - cell.com
Lymphatic vessels form a critical component in the regulation of human health and disease.
While their functional significance is increasingly being recognized, the comprehensive …

Single-cell epigenomics and functional fine-mapping of atherosclerosis GWAS loci

…, A Toropainen, I Selvarajan, T Lönnberg… - Circulation …, 2021 - Am Heart Assoc
Rationale: Genome-wide association studies have identified hundreds of loci associated with
coronary artery disease (CAD). Many of these loci are enriched in cisregulatory elements …

[PDF][PDF] Global chromatin state analysis reveals lineage-specific enhancers during the initiation of human T helper 1 and T helper 2 cell polarization

…, A Larjo, SK Tripathi, U Wagner, Y Luu, T Lönnberg… - Immunity, 2013 - cell.com
Naive CD4 + T cells can differentiate into specific helper and regulatory T cell lineages in
order to combat infection and disease. The correct response to cytokines and a controlled …