Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer
BACKGROUND Biomolecular mechanisms are typically inferred from static structural “snapshots”
obtained by x-ray crystallography, nuclear magnetic resonance (NMR) spectroscopy, …
obtained by x-ray crystallography, nuclear magnetic resonance (NMR) spectroscopy, …
Make them blink: Probes for super‐resolution microscopy
…, IH Stein, B Person‐Skegro, T Cordes… - …, 2010 - Wiley Online Library
… the fluorophore into the non-fluorescent state T 1 . The kinetics for switching the fluorophore
… constant k T , that is, the inverse of the triplet-state lifetime. This rate constant k T determines …
… constant k T , that is, the inverse of the triplet-state lifetime. This rate constant k T determines …
Alternating-laser excitation: single-molecule FRET and beyond
… and the acceptor (k T ). E is hence easily determined by comparing the fluorescence
lifetimes τ D of the donor-only species and τ T −1 = k D + k T = τ D −1 + k T for the donor–acceptor …
lifetimes τ D of the donor-only species and τ T −1 = k D + k T = τ D −1 + k T for the donor–acceptor …
Immune-responsive gene 1 protein links metabolism to immunity by catalyzing itaconic acid production
A Michelucci, T Cordes, J Ghelfi… - Proceedings of the …, 2013 - National Acad Sciences
Immunoresponsive gene 1 (Irg1) is highly expressed in mammalian macrophages during
inflammation, but its biological function has not yet been elucidated. Here, we identify Irg1 as …
inflammation, but its biological function has not yet been elucidated. Here, we identify Irg1 as …
[HTML][HTML] Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study
Single-molecule Förster resonance energy transfer (smFRET) is increasingly being used to
determine distances, structures, and dynamics of biomolecules in vitro and in vivo. However, …
determine distances, structures, and dynamics of biomolecules in vitro and in vivo. However, …
[HTML][HTML] Immunoresponsive gene 1 and itaconate inhibit succinate dehydrogenase to modulate intracellular succinate levels
Metabolic reprogramming is emerging as a hallmark of the innate immune response, and
the dynamic control of metabolites such as succinate serves to facilitate the execution of …
the dynamic control of metabolites such as succinate serves to facilitate the execution of …
[HTML][HTML] The 2015 super-resolution microscopy roadmap
… advanced signal processing for STED / Gated STED (Giuseppe Vicidomini, Marco Castello
and Alberto Diaspro) and approaches to improve fluorophore photostability (Thorben Cordes)…
and Alberto Diaspro) and approaches to improve fluorophore photostability (Thorben Cordes)…
On the mechanism of Trolox as antiblinking and antibleaching reagent
Recent advances in photobleaching and blinking prevention have aided the advancement
of single-molecule and super-resolution fluorescence microscopy. However, a common …
of single-molecule and super-resolution fluorescence microscopy. However, a common …
Serine restriction alters sphingolipid diversity to constrain tumour growth
Serine, glycine and other nonessential amino acids are critical for tumour progression, and
strategies to limit their availability are emerging as potential therapies for cancer 1 , 2 – 3 . …
strategies to limit their availability are emerging as potential therapies for cancer 1 , 2 – 3 . …
Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy
J Vogelsang, T Cordes, C Forthmann… - Proceedings of the …, 2009 - National Acad Sciences
… S5A can clearly be assigned to the triplet state with k T in the absence of oxygen being k T
= (5.5 ± 2.5) × 10 3 s −1 (see SI Text for analysis). The independence of the action of AA and …
= (5.5 ± 2.5) × 10 3 s −1 (see SI Text for analysis). The independence of the action of AA and …