User profiles for T. Antao

Tiago Antao

University of Montana
Verified email at cam.ac.uk
Cited by 10314

[HTML][HTML] Biopython: freely available Python tools for computational molecular biology and bioinformatics

PJA Cock, T Antao, JT Chang, BA Chapman… - …, 2009 - ncbi.nlm.nih.gov
The Biopython project is a mature open source international collaboration of volunteer
developers, providing Python libraries for a wide range of bioinformatics problems. Biopython …

[HTML][HTML] LOSITAN: A workbench to detect molecular adaptation based on a F st -outlier method

T Antao, A Lopes, RJ Lopes, A Beja-Pereira… - BMC …, 2008 - Springer
… many pitfalls involved with using F st -outlier approaches in general, it is not able to solve
fundamental issues regarding these approaches, for instance the non-linear behavior of F s t = …

Recent advances in conservation and population genomics data analysis

S Hendricks, EC Anderson, T Antao… - Evolutionary …, 2018 - Wiley Online Library
New computational methods and next‐generation sequencing (NGS) approaches have
enabled the use of thousands or hundreds of thousands of genetic markers to address …

Genomic analyses inform on migration events during the peopling of Eurasia

…, CL Scheib, M Järve, M Karmin, GS Jacobs, T Antao… - Nature, 2016 - nature.com
High-coverage whole-genome sequence studies have so far focused on a limited number 1
of geographically restricted populations 2 , 3 , 4 , 5 , or been targeted at specific diseases, …

Effects of overlapping generations on linkage disequilibrium estimates of effective population size

RS Waples, T Antao, G Luikart - Genetics, 2014 - academic.oup.com
… In time period 0, the age of each of the N T individuals was drawn randomly from the stable
age distribution. Because survival and reproduction were random and independent, total …

Genetic signatures reveal high-altitude adaptation in a set of Ethiopian populations

…, A Tarekegn, R Ekong, T Antao… - Molecular biology …, 2013 - academic.oup.com
… S3A, Supplementary Material online), we used a time of selection T SEL of 1.5 kya and 3
kya, and under the scenario in which selection occurs in the non-African population (…

[HTML][HTML] A selective sweep on a deleterious mutation in CPT1A in Arctic populations

…, G Jacobs, L Pagani, DJ Lawson, T Antão… - The American Journal of …, 2014 - cell.com
… 1436C>T, we measured its frequency in a global panel of modern and ancient genomes
and created a median-joining network of the locus (Figure 2). In the modern samples, we found …

[HTML][HTML] Genome-wide analysis of cold adaptation in indigenous Siberian populations

A Cardona, L Pagani, T Antao, DJ Lawson… - PloS one, 2014 - journals.plos.org
Following the dispersal out of Africa, where hominins evolved in warm environments for
millions of years, our species has colonised different climate zones of the world, including high …

Early detection of population declines: high power of genetic monitoring using effective population size estimators

T Antao, A Pérez‐Figueroa… - Evolutionary Applications, 2011 - Wiley Online Library
… where t is the time between generations, S 0 is the sample size at the reference, prebottleneck
point and S t at the postbottleneck generation being considered. The F k estimator was …

Genome-wide evidence of Austronesian–Bantu admixture and cultural reversion in a hunter-gatherer group of Madagascar

…, L Pagani, FX Ricaut, T Antao… - Proceedings of the …, 2014 - National Acad Sciences
Linguistic and cultural evidence suggest that Madagascar was the final point of two major
dispersals of Austronesian- and Bantu-speaking populations. Today, the Mikea are described …