User profiles for T. D. Read

Timothy D Read

Emory University
Verified email at emory.edu
Cited by 21020

Genome-based prediction of bacterial antibiotic resistance

M Su, SW Satola, TD Read - Journal of clinical microbiology, 2019 - Am Soc Microbiol
… errors present in individual reads or DNA … of reads needed for a positive result can help
overcome read error problems. Software tools use different strategies for processing raw reads. …

[HTML][HTML] Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology

TD Read, RC Massey - Genome medicine, 2014 - Springer
… of sequence reads per … reads is also high, making the problem of imputation of missing
genotypes small relative to human studies [45]. The increasing use of single molecule long-read

[HTML][HTML] DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

…, L Umayam, SR Gill, KE Nelson, TD Read… - Nature, 2000 - nature.com
Here we determine the complete genomic sequence of the Gram negative, γ-Proteobacterium
Vibrio cholerae El Tor N16961 to be 4,033,460 base pairs (bp). The genome consists of …

Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae

H Tettelin, KE Nelson, IT Paulsen, JA Eisen, TD Read… - Science, 2001 - science.org
… gordonii, because reads from libraries made with DNA derived from this stock were composed
entirely of non–S. pneumoniae sequences (… Login or register for free to read this article. …

Bacillus anthracis, a bug with attitude!

L Baillie, TD Read - Current opinion in microbiology, 2001 - Elsevier
… The 181654 base pair (bp) sequence contained 143 identifiable open reading frames (ORFs…
anthracis generated in the preliminary stage of genome sequencing (TD Read, unpublished …

[HTML][HTML] Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

…, KE Nelson, EJ Gaidos, WC Nelson, TD Read… - Nature …, 2002 - nature.com
… oneidensis genome, which consists of a 4,969,803–base pair circular chromosome with
4,758 predicted protein-encoding open reading frames (CDS) and a 161,613–base pair plasmid …

Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

…, GSA Myers, KE Nelson, R Seshadri, TD Read… - Science, 2003 - science.org
… A total of 3337 predicted protein-encoding open reading frames (ORFs) were identified on
the chromosome and three plasmids of E. faecalis … Login or register for free to read this article. …

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

TD Read, SN Peterson, N Tourasse, LW Baillie… - Nature, 2003 - nature.com
read lengths of 609 nt and 645 nt. The completed chromosome sequence consisted of
73,806 and 6,052 reads … This improved its ability to exclude short open reading frames (ORFs), …

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39

TD Read, RC Brunham, C Shen, SR Gill… - Nucleic acids …, 2000 - academic.oup.com
… The C.pneumoniae genome was completed using 26 754 sequence reads (average length
… The final chromosome and phage sequences comprised data from 19 903 sequence reads. …

Complete genome sequence of the Q-fever pathogen Coxiella burnetii

…, IT Paulsen, JA Eisen, TD Read… - Proceedings of the …, 2003 - National Acad Sciences
The 1,995,275-bp genome of Coxiella burnetii, Nine Mile phase I RSA493, a highly virulent
zoonotic pathogen and category B bioterrorism agent, was sequenced by the random …