User profiles for T. D. Read
Timothy D ReadEmory University Verified email at emory.edu Cited by 21020 |
Genome-based prediction of bacterial antibiotic resistance
… errors present in individual reads or DNA … of reads needed for a positive result can help
overcome read error problems. Software tools use different strategies for processing raw reads. …
overcome read error problems. Software tools use different strategies for processing raw reads. …
[HTML][HTML] Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology
… of sequence reads per … reads is also high, making the problem of imputation of missing
genotypes small relative to human studies [45]. The increasing use of single molecule long-read …
genotypes small relative to human studies [45]. The increasing use of single molecule long-read …
[HTML][HTML] DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
Here we determine the complete genomic sequence of the Gram negative, γ-Proteobacterium
Vibrio cholerae El Tor N16961 to be 4,033,460 base pairs (bp). The genome consists of …
Vibrio cholerae El Tor N16961 to be 4,033,460 base pairs (bp). The genome consists of …
Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae
… gordonii, because reads from libraries made with DNA derived from this stock were composed
entirely of non–S. pneumoniae sequences (… Login or register for free to read this article. …
entirely of non–S. pneumoniae sequences (… Login or register for free to read this article. …
Bacillus anthracis, a bug with attitude!
L Baillie, TD Read - Current opinion in microbiology, 2001 - Elsevier
… The 181654 base pair (bp) sequence contained 143 identifiable open reading frames (ORFs…
anthracis generated in the preliminary stage of genome sequencing (TD Read, unpublished …
anthracis generated in the preliminary stage of genome sequencing (TD Read, unpublished …
[HTML][HTML] Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis
… oneidensis genome, which consists of a 4,969,803–base pair circular chromosome with
4,758 predicted protein-encoding open reading frames (CDS) and a 161,613–base pair plasmid …
4,758 predicted protein-encoding open reading frames (CDS) and a 161,613–base pair plasmid …
Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis
… A total of 3337 predicted protein-encoding open reading frames (ORFs) were identified on
the chromosome and three plasmids of E. faecalis … Login or register for free to read this article. …
the chromosome and three plasmids of E. faecalis … Login or register for free to read this article. …
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
TD Read, SN Peterson, N Tourasse, LW Baillie… - Nature, 2003 - nature.com
… read lengths of 609 nt and 645 nt. The completed chromosome sequence consisted of
73,806 and 6,052 reads … This improved its ability to exclude short open reading frames (ORFs), …
73,806 and 6,052 reads … This improved its ability to exclude short open reading frames (ORFs), …
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
… The C.pneumoniae genome was completed using 26 754 sequence reads (average length
… The final chromosome and phage sequences comprised data from 19 903 sequence reads. …
… The final chromosome and phage sequences comprised data from 19 903 sequence reads. …
Complete genome sequence of the Q-fever pathogen Coxiella burnetii
The 1,995,275-bp genome of Coxiella burnetii, Nine Mile phase I RSA493, a highly virulent
zoonotic pathogen and category B bioterrorism agent, was sequenced by the random …
zoonotic pathogen and category B bioterrorism agent, was sequenced by the random …