User profiles for T. D. Otto
Thomas D. OttoUniversity of Glasgow Verified email at glasgow.ac.uk Cited by 18830 |
[PDF][PDF] Kinetoplastid phylogenomics reveals the evolutionary innovations associated with the origins of parasitism
The evolution of parasitism is a recurrent event in the history of life and a core problem in
evolutionary biology. Trypanosomatids are important parasites and include the human …
evolutionary biology. Trypanosomatids are important parasites and include the human …
[HTML][HTML] A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
Background Next generation sequencing (NGS) technology has revolutionized genomic and
genetic research. The pace of change in this area is rapid with three major new sequencing …
genetic research. The pace of change in this area is rapid with three major new sequencing …
[HTML][HTML] Circlator: automated circularization of genome assemblies using long sequencing reads
The assembly of DNA sequence data is undergoing a renaissance thanks to emerging
technologies capable of producing reads tens of kilobases long. Assembling complete bacterial …
technologies capable of producing reads tens of kilobases long. Assembling complete bacterial …
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Background The process of generating raw genome sequence data continues to become
cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished …
cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished …
Uncovering the essential genes of the human malaria parasite Plasmodium falciparum by saturation mutagenesis
INTRODUCTION Malaria remains a devastating global parasitic disease, with the majority
of malaria deaths caused by the highly virulent Plasmodium falciparum. The extreme AT-bias …
of malaria deaths caused by the highly virulent Plasmodium falciparum. The extreme AT-bias …
Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis
Immune-regulatory mechanisms of drug-free remission in rheumatoid arthritis (RA) are
unknown. We hypothesized that synovial tissue macrophages (STM), which persist in remission, …
unknown. We hypothesized that synovial tissue macrophages (STM), which persist in remission, …
ABACAS: algorithm-based automatic contiguation of assembled sequences
Due to the availability of new sequencing technologies, we are now increasingly interested
in sequencing closely related strains of existing finished genomes. Recently a number of de …
in sequencing closely related strains of existing finished genomes. Recently a number of de …
Two Nonrecombining Sympatric Forms of the Human Malaria Parasite Plasmodium ovale Occur Globally
…, M Burke, R Lee, M Blaze, TD Otto… - The Journal of …, 2010 - academic.oup.com
Background . Malaria in humans is caused by apicomplexan parasites belonging to 5 species
of the genus Plasmodium. Infections with Plasmodium ovale are widely distributed but …
of the genus Plasmodium. Infections with Plasmodium ovale are widely distributed but …
Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania
Leishmania parasites cause a spectrum of clinical pathology in humans ranging from
disfiguring cutaneous lesions to fatal visceral leishmaniasis. We have generated a reference …
disfiguring cutaneous lesions to fatal visceral leishmaniasis. We have generated a reference …
[HTML][HTML] A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni
…, C Lloyd, J McQuillan, G Oliveira, TD Otto… - PLoS neglected …, 2012 - journals.plos.org
Schistosomiasis is one of the most prevalent parasitic diseases, affecting millions of people
in developing countries. Amongst the human-infective species, Schistosoma mansoni is also …
in developing countries. Amongst the human-infective species, Schistosoma mansoni is also …