User profiles for S. Zaranek

Alexander (Sasha) Wait Zaranek

Curii Corporation
Verified email at post.harvard.edu
Cited by 5729

Toil enables reproducible, open source, big biomedical data analyses

…, DA Patterson, AD Joseph, J Zhu, S Zaranek… - Nature …, 2017 - nature.com
… Technologies enabling this from companies such as Emerald Cloud Lab (S. San Francisco,
CA, USA), Synthace (London) and Transcriptic (Menlo Park, CA, USA) could, for example, …

Granule-by-granule reconstruction of a sandpile from x-ray microtomography data

…, G Martinez, LH Seeley, KH Kim, EA Behne, S Zaranek… - Physical Review E, 2000 - APS
Mesoscale disordered materials are ubiquitous in industry and in the environment. Any
fundamental understanding of the transport and mechanical properties of such materials must …

Early magnetic field and magmatic activity on Mars from magma ocean cumulate overturn

LT Elkins-Tanton, SE Zaranek, EM Parmentier… - Earth and Planetary …, 2005 - Elsevier
… A nominal value of 10 19 Pa s value is used here; but asthenospheric values on Earth may
be as low as 10 18 Pa s [35], and variations of creep rate with water content and grain size …

Accelerating genomic data generation and facilitating genomic data access using decentralization, privacy-preserving technologies and equitable compensation

…, SW Zaranek, AW Zaranek… - Blockchain in …, 2018 - blockchainhealthcaretoday.com
… the data buyer’s public key. Finally, the data buyer’s access permission is registered on
the blockchain and tokens are sent from the smart contract to the data owner’s wallet. Crunch …

Convective cooling of an initially stably stratified fluid with temperature‐dependent viscosity: Implications for the role of solid‐state convection in planetary evolution

SE Zaranek, EM Parmentier - Journal of Geophysical Research …, 2004 - Wiley Online Library
… - Zaranek - 2004 - Journal of Geophysical Research: Solid Earth - Wiley Online Library …
or mantle viscosities on the order of 10 18 Pa s or less are required for convective instability. …

The onset of convection in fluids with strongly temperature-dependent viscosity cooled from above with implications for planetary lithospheres

SE Zaranek, EM Parmentier - Earth and Planetary Science Letters, 2004 - Elsevier
… to the temperature distribution(A1) T(z)=T s + Δ T i erf π 2 z δ where δ= πκt and T s is the top
boundary temperature. Then(A2) Δ T i − Δ T c =T(δ L )−T s = Δ T i erf π 2 δ L δ and with ΔT c /…

[PDF][PDF] Gpu programming in matlab

J Reese, S Zaranek - MathWorks News&Notes. Natick, MA: The …, 2012 - 132.248.181.216
… Data transfer overhead can become so significant that it degrades the application’s overall
performance, especially if you repeatedly exchange data between the CPU and GPU to …

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

…, WJ Kent, DA Patterson, AD Joseph, J Zhu, S Zaranek… - bioRxiv, 2016 - biorxiv.org
… Let’s now introduce a bug in the code, so we can understand what a failure looks like in
Toil, and how we would go about resuming the pipeline. On line 30, the first line of the down() …

Lattice dynamical theory of thermal expansion and mode Grüneisen parameters in cubic BP

DN Talwar, G Thaler, S Zaranek, K Peterson, S Linger… - Physical Review B, 1997 - APS
… the wave vector dependence of mode ’s, it is clear cf. Eqs. … ’s for the TA branch near the X
zone boundary with TA values being relatively weak. On the other hand, the calculated mode ’s

[HTML][HTML] An unbiased index to quantify participant's phenotypic contribution to an open-access cohort

…, SW Zaranek, YK Chan, JE Lunshof, AW Zaranek… - Scientific Reports, 2017 - nature.com
The Personal Genome Project (PGP) is an effort to enroll many participants to create an
open-access repository of genome, health and trait data for research. However, PGP participants …