User profiles for S. Preissl

Sebastian Preissl

Institute of Experimental and Clinical Pharmacology and Toxicology, University of Freiburg
Verified email at pharmakol.uni-freiburg.de
Cited by 6928

Characterizing cis-regulatory elements using single-cell epigenomics

S Preissl, KJ Gaulton, B Ren - Nature Reviews Genetics, 2023 - nature.com
Cell type-specific gene expression patterns and dynamics during development or in disease
are controlled by cis-regulatory elements (CREs), such as promoters and enhancers. …

Interpreting non-coding disease-associated human variants using single-cell epigenomics

KJ Gaulton, S Preissl, B Ren - Nature Reviews Genetics, 2023 - nature.com
S-LDSC is designed to test for enrichment of an annotation using variants genome-wide, …
However, it is worth noting that studies performing S-LDSC analyses often correct for multiple …

[HTML][HTML] Comparative cellular analysis of motor cortex in human, marmoset and mouse

…, C Luo, EA Mukamel, A Pinto-Duarte, S Preissl… - Nature, 2021 - nature.com
The primary motor cortex (M1) is essential for voluntary fine-motor control and is functionally
conserved across mammals 1 . Here, using high-throughput transcriptomic and epigenomic …

Interpreting type 1 diabetes risk with genetics and single-cell epigenomics

…, S Huang, K Korgaonkar, S Heller, A Kleger, S Preissl… - Nature, 2021 - nature.com
… We obtained Capan-1 pancreatic ductal adenocarcinoma cell lines from ATCC and cultured
them using Iscove’s modified Dulbecco’s medium with 20% fetal bovine serum, 100 units/ml …

Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition

…, M Lerdrup, G Li, S Kuan, B Li, AY Lee, S Preissl… - Nature, 2016 - nature.com
… We allowed 30 s pauses on ice between each 30 s session, using pulse settings with 0.5 s
… 200 μl of RIPA Dilution buffer was added to the pellet and sonicated 3 × 30 s. The sample …

[PDF][PDF] A single-cell atlas of chromatin accessibility in the human genome

…, Y Qiu, YE Li, KJ Gaulton, A Wang, S Preissl… - Cell, 2021 - cell.com
… ) and provided improved resolution by linking complex traits to specific cell type(s) (Figure
S6). Further, for 160 additional traits, … We thank S. Kuan for sequencing support. We thank B. …

[PDF][PDF] Complex oscillatory waves emerging from cortical organoids model early human brain network development

…, R Gao, PD Negraes, J Gu, J Buchanan, S Preissl… - Cell stem cell, 2019 - cell.com
… ; ii) at least 1 spike/s; and iii) 1 s away from any other network events. The first … s before to
2.5 s after the peak was collected as the network event, as events almost always subsided 2.5 s

[HTML][HTML] Comprehensive analysis of single cell ATAC-seq data with SnapATAC

R Fang, S Preissl, Y Li, X Hou, J Lucero, X Wang… - Nature …, 2021 - nature.com
… the nearest s landmarks in the reference dataset in the joint embedding space. Nearest
anchors are then weighted based on their distance to the cell c over the distance to the s-th …

[HTML][HTML] Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease

R Gilsbach, S Preissl, BA Grüning, T Schnick… - Nature …, 2014 - nature.com
… Chromatin was sheared using a Bioruptor (Diagenode, Liege, Belgium) with 30 high-energy
cycles (30 s on/30 s off) to an average size of 200–400 bp. Lysates were diluted 1:10 with …

Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells

Y Zhang, T Li, S Preissl, ML Amaral, JD Grinstein… - Nature …, 2019 - nature.com
… From our CRISPRi and ChIP-Seq studies, we discovered that HERV-H’s ability to form TAD
boundaries is highly dependent on transcription, and more specifically RNA polymerase II (…