RNA polymerase holoenzyme: structure, function and biological implications

S Borukhov, E Nudler - Current opinion in microbiology, 2003 - Elsevier
… ), 22 water-mediated hydrogen bonds and 41 van der Waal’s (hydrophobic) contacts (<4 Å).
All … coli core is higher than that of σ to Tth core (S Borukhov unpublished data). However, the …

RNA polymerase: the vehicle of transcription

S Borukhov, E Nudler - Trends in microbiology, 2008 - cell.com
RNA polymerase (RNAP) is the principal enzyme of gene expression and regulation for all
three divisions of life: Eukaryota, Archaea and Bacteria. Recent progress in the structural and …

Bacterial transcription elongation factors: new insights into molecular mechanism of action

S Borukhov, J Lee, O Laptenko - Molecular microbiology, 2005 - Wiley Online Library
… Research in Sergei Borukhov's laboratory is funded by a grant from NIH. We are grateful
to reviewers of this manuscript for their comments and helpful suggestions. We apologize to …

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution

…, MN Vassylyeva, S Borukhov, S Yokoyama - Foundations of …, 2002 - journals.iucr.org
X-ray structures of the universal translation initiation factor IF2/eIF5B have been determined
in three states: free enzyme, inactive IF2/eIF5B-GDP, and active IF2/eIF5B-GTP. IF2/eIF5B is …

Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons

TV Pestova, SI Borukhov, CUT Hellen - Nature, 1998 - nature.com
… 48S complexes assemble correctly in rabbit reticulocyte lysate (RRL) 7 , which we therefore
used as a source from which to purify additional factor(s) required for assembly of the 48S …

Transcript cleavage factors from E. coli

S Borukhov, V Sagitov, A Goldfarb - Cell, 1993 - cell.com
… coli MRE600 were as described by Borukhov et al. (1992) with the exception that the
procedure was scaled up for 100 g of initial cell mass and that the dimensions of the phenyl-…

Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis …

A Unbehaun, SI Borukhov, CUT Hellen… - Genes & …, 2004 - genesdev.cshlp.org
… 48S complexes were initially assembled on AUG triplets with eIF2, [ 35 S]Met- Formula (to
permit monitoring of its association), unlabeled GTP or 32 P-GTP (to permit monitoring of GTP …

[HTML][HTML] Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation

…, C Dharia, A Napoli, O Laptenko, J Lee, S Borukhov… - Cell, 2005 - cell.com
We define the target, mechanism, and structural basis of inhibition of bacterial RNA polymerase
(RNAP) by the tetramic acid antibiotic streptolydigin (Stl). Stl binds to a site adjacent to …

Intrinsic transcript cleavage activity of RNA polymerase.

…, A Das, A Goldfarb, S Borukhov - Proceedings of the …, 1995 - National Acad Sciences
The GreA and GreB transcript cleavage factors of Escherichia coli suppress elongation arrest
and may have a proofreading role in transcription. With the use of E. coli greA-greB- mutant…

[HTML][HTML] Transcription through the roadblocks: the role of RNA polymerase cooperation

…, F Toulmé, AR Rahmouni, S Borukhov… - The EMBO …, 2003 - embopress.org
… the very strong T7 A1 promoter located at a relatively long distance from the operator (S.Borukhov,
unpublished results). The difference in the promoter activity and its location relative to …