… a large increase in reactivity at one of the A’s and a very similar reactivity to wild type at
the other A. This indicates that one of the A’s maintains a similar structural role to the wild-type …

… To overcome this limitation, Ding and Lawrence extended McCaskill’s approach to equilibrium
partition function calculation into a method that samples suboptimal secondary structures …

… We focus on a novel assay utilizing this approach, called selective 2′-hydroxyl acylation
analyzed by primer extension sequencing (SHAPE-Seq), that can be used to characterize RNA …

… Preliminary results from our laboratory (S. Aviram, K. Skorecki, unpublished data) have
demonstrated that IFNγ markedly increases the expression of APOL1 mRNA and protein from …

… Simple criteria based on a transcript’s coverage per unit length have been utilized to screen
… the “goodness” of each nucleotide’s coverage. Given an acceptable level of variation in …

… beginning and end sites to infer nucleotide reactivities as described in Aviran et al. (2011a). …
An extensive analysis of this question for our previous results can be found in Aviran et al. (…

… We propose that the import factors that escort telomerase back to the nucleus in late S/G2
phase recognize some aspect(s) of the holoenzyme. In contrast, the Yku-mediated G1 phase …

… We tested SLEQ’s ability to recover the predicted allelic structures and estimate their
abundances from mixture data (Fig. 2a–c). Analysis of >56 million reads revealed the ground truth …

This study assessed storybook reading at home with reference to kindergartners’ empathy,
socioemotional adjustment, language, and alphabetic skills. Beyond considering the …

… This overwhelming population disparity between AAs and EAs and, greater familial clustering
among AAs, point to a prominent contribution of underlying genetic factor(s) (14). Recently, …