MirGeneDB 2.1: toward a complete sampling of all major animal phyla
…, V Ovchinnikov, SU Umu… - Nucleic Acids …, 2022 - academic.oup.com
We describe an update of MirGeneDB, the manually curated microRNA gene database.
Adhering to uniform and consistent criteria for microRNA annotation and nomenclature, we …
Adhering to uniform and consistent criteria for microRNA annotation and nomenclature, we …
A comprehensive profile of circulating RNAs in human serum
SU Umu, H Langseth, C Bucher-Johannessen… - RNA biology, 2018 - Taylor & Francis
Non-coding RNA (ncRNA) molecules have fundamental roles in cells and many are also
stable in body fluids as extracellular RNAs. In this study, we used RNA sequencing (RNA-seq) …
stable in body fluids as extracellular RNAs. In this study, we used RNA sequencing (RNA-seq) …
A comprehensive benchmark of RNA–RNA interaction prediction tools for all domains of life
SU Umu, PP Gardner - Bioinformatics, 2017 - academic.oup.com
Motivation The aim of this study is to assess the performance of RNA–RNA interaction prediction
tools for all domains of life. Results Minimum free energy (MFE) and alignment methods …
tools for all domains of life. Results Minimum free energy (MFE) and alignment methods …
[HTML][HTML] Effect of silica fume as a waste material for sustainable environment on the stabilization and dynamic behavior of dispersive soil
The use of dispersive soils, which are common in many parts of the world, in engineering
applications such as water structures, earthen dams and road embankments is possible with …
applications such as water structures, earthen dams and road embankments is possible with …
Serum RNAs can predict lung cancer up to 10 years prior to diagnosis
Lung cancer (LC) prognosis is closely linked to the stage of disease when diagnosed. We
investigated the biomarker potential of serum RNAs for the early detection of LC in smokers at …
investigated the biomarker potential of serum RNAs for the early detection of LC in smokers at …
[PDF][PDF] Epigenome‐wide analysis of methylation changes in the sequence of gallstone disease, dysplasia, and gallbladder cancer
…, F Boekstegers, V Garate‐Calderon, SU Umu… - …, 2021 - Wiley Online Library
Background and Aims Gallbladder cancer (GBC) is a highly aggressive malignancy of the
biliary tract. Most cases of GBC are diagnosed in low‐income and middle‐income countries, …
biliary tract. Most cases of GBC are diagnosed in low‐income and middle‐income countries, …
[HTML][HTML] Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity
Small non-coding RNAs (sncRNA) are regulators of cell functions and circulating sncRNAs
from the majority of RNA classes are potential non-invasive biomarkers. Understanding how …
from the majority of RNA classes are potential non-invasive biomarkers. Understanding how …
[PDF][PDF] Accurate microRNA annotation of animal genomes using trained covariance models of curated microRNA complements in MirMachine
SU Umu, VM Paynter, H Trondsen, T Buschmann… - Cell Genomics, 2023 - cell.com
The annotation of microRNAs depends on the availability of transcriptomics data and expert
knowledge. This has led to a gap between the availability of novel genomes and high-…
knowledge. This has led to a gap between the availability of novel genomes and high-…
[HTML][HTML] Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
Noncoding RNAs are integral to a wide range of biological processes, including translation,
gene regulation, host-pathogen interactions and environmental sensing. While genomics is …
gene regulation, host-pathogen interactions and environmental sensing. While genomics is …
[HTML][HTML] Profiling small RNAs in fecal immunochemical tests: is it possible?
Fecal microRNAs represent promising molecules with potential clinical interest as non-invasive
diagnostic and prognostic biomarkers. Colorectal cancer (CRC) screening based on the …
diagnostic and prognostic biomarkers. Colorectal cancer (CRC) screening based on the …