The effects of artificial selection on the maize genome

SI Wright, IV Bi, SG Schroeder, M Yamasaki… - Science, 2005 - science.org
Domestication promotes rapid phenotypic evolution through artificial selection. We investigated
the genetic history by which the wild grass teosinte (Zea mays ssp. parviglumis) was …

De novo assembly of the cattle reference genome with single-molecule sequencing

…, C Dreischer, SJ Schultheiss, SG Schroeder… - …, 2020 - academic.oup.com
Background Major advances in selection progress for cattle have been made following the
introduction of genomic tools over the past 10–12 years. These tools depend upon the Bos …

[HTML][HTML] Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

…, JA Hammond, GC Waldbieser, SG Schroeder… - Nature …, 2017 - nature.com
The decrease in sequencing cost and increased sophistication of assembly algorithms for
short-read platforms has resulted in a sharp increase in the number of species with genome …

Metabolomic and proteomic changes in the xylem sap of maize under drought

S Alvarez, EL Marsh, SG Schroeder… - Plant, cell & …, 2008 - Wiley Online Library
Plants produce compounds in roots that are transported to shoots via the xylem sap. Some
of these compounds are vital for signalling and adaptation to environmental stress such as …

Genetic, physical, and informatics resources for maize. On the road to an integrated map

…, H Sanchez-Villeda, Z Fang, SG Schroeder… - Plant …, 2002 - academic.oup.com
Maize (Zea mays) is among the most important crop plants in the world. For any crop plant,
an integrated genetic and physical map serves as the foundation for numerous studies, …

Copy number variation of individual cattle genomes using next-generation sequencing

DM Bickhart, Y Hou, SG Schroeder, C Alkan… - Genome …, 2012 - genome.cshlp.org
Copy number variations (CNVs) affect a wide range of phenotypic traits; however, CNVs in
or near segmental duplication regions are often intractable. Using a read depth approach …

A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement

…, MI Tenaillon, I Vroh Bi, SG Schroeder… - The Plant …, 2005 - academic.oup.com
Maize (Zea mays subsp mays) was domesticated from teosinte (Z. mays subsp parviglumis)
through a single domestication event in southern Mexico between 6000 and 9000 years ago…

An improved pig reference genome sequence to enable pig genetics and genomics research

…, LA Rund, CA Sargent, LB Schook, SG Schroeder… - …, 2020 - academic.oup.com
Background The domestic pig (Sus scrofa) is important both as a food source and as a
biomedical model given its similarity in size, anatomy, physiology, metabolism, pathology, and …

[HTML][HTML] MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

J Sun, K Aswath, SG Schroeder, JD Lippolis… - BMC genomics, 2015 - Springer
Background Milk exosomes are a rich source of microRNAs (miRNAs) that are protected from
degradation. Ingestion of milk and subsequent absorption of miRNAs into recipient cells by …

SNP assay development for linkage map construction, anchoring whole-genome sequence, and other genetic and genomic applications in common bean

…, J Jenkins, EY Hwang, SG Schroeder… - G3: Genes …, 2015 - academic.oup.com
A total of 992,682 single-nucleotide polymorphisms (SNPs) was identified as ideal for
Illumina Infinium II BeadChip design after sequencing a diverse set of 17 common bean (…