User profiles for R. Sadeh

Ronen Sadeh

Research associate Hebrew University
Verified email at mail.huji.ac.il
Cited by 1656

[HTML][HTML] Genome-wide “re”-modeling of nucleosome positions

R Sadeh, CD Allis - Cell, 2011 - cell.com
Two recent studies mapped nucleosomes across the yeast and human genomes, teasing
apart the relative contributions of DNA sequence and chromatin remodelers to nucleosome …

Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

CG de Boer, ED Vaishnav, R Sadeh, EL Abeyta… - Nature …, 2020 - nature.com
… If the model-refined motif had a Pearson r 2 greater than the original in at least 95% of
samples, we considered the experiment to be predicted better by the refined motif. Conversely, if …

ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin

R Sadeh, I Sharkia, G Fialkoff, A Rahat, J Gutin… - Nature …, 2021 - nature.com
… genomic locations, such as all promoters, (r > 0.8; Fig. 1e and Extended Data Fig. 1d). …
BAM files were processed by samtools (1.7) to BED files and by R (4.0.2) scripts (see ‘Code …

[PDF][PDF] Microbial‐derived lithocholic acid and vitamin K2 drive the metabolic maturation of pluripotent stem cells–derived and fetal hepatocytes

…, M Zimerman, D Kitsberg, R Schwartz, R Sadeh… - …, 2015 - Wiley Online Library
… Analysis of 12 compounds showed an R 2 correlation of 0.94 between TC50 values
obtained in stem cell–derived hepatocytes and primary cells, compared to 0.62 for HepG2 cells. …

[PDF][PDF] Fine-resolution mapping of TF binding and chromatin interactions

J Gutin, R Sadeh, N Bodenheimer, D Joseph-Strauss… - Cell reports, 2018 - cell.com
Transcription factor (TF) binding to DNA is crucial for transcriptional regulation. There are
multiple methods for mapping such binding. These methods balance between input …

[PDF][PDF] Mapping the landscape of a eukaryotic degronome

…, A Appleboim, RG Gardner, N Friedman, R Sadeh… - Molecular cell, 2016 - cell.com
… Data are represented as mean + SEM (n R 3). (B) Immunoblot analysis of the expression level
R. Kulka for the useful advises during the screen setup and for the pOC9 plasmid. We also …

UAS-based imaging for prediction of chickpea crop biophysical parameters and yield

…, A Brook, G Atsmon, E Smirnov, R Sadeh… - … and Electronics in …, 2023 - Elsevier
… of the biophysical parameters in 2019 (R 2 values ≥ 0.50) but failed (R 2 values ≤ 0.25) in
… PLS-R and SVM models increased the accuracy level for both biophysical parameters (R 2 …

[HTML][HTML] Complementary chemometrics and deep learning for semantic segmentation of tall and wide visible and near-infrared spectral images of plants

P Mishra, R Sadeh, E Bino, G Polder, MP Boer… - … and Electronics in …, 2021 - Elsevier
Close range spectra imaging of agricultural plants is widely performed to support digital
plant phenotyping, a task where physicochemical changes in plants are monitored in a non-…

[HTML][HTML] Self-learning of point-of-care cardiac ultrasound–Can medical students teach themselves?

L Fuchs, D Gilad, Y Mizrakli, R Sadeh, O Galante… - PloS one, 2018 - journals.plos.org
Background Point-of-care ultrasonography (PoCUS) is a rapidly evolving discipline that aims
to train non-cardiologists, non-radiologists clinicians in performing bedside ultrasound to …

PRAJA1 is a ubiquitin ligase for the polycomb repressive complex 2 proteins

M Zoabi, R Sadeh, P de Bie, A Ciechanover - Biochemical and biophysical …, 2011 - Elsevier
Methylation of lysine 27 on histone H3 by the polycomb repressive complex 2 (PRC2) leads
to transcriptional repression of genes which are critical to development. PRC2 core complex …