An overview of Ensembl

…, C Melsopp, P Meidl, E Mongin, R Pettett… - Genome …, 2004 - genome.cshlp.org
Ensembl ( http://www.ensembl.org/ ) is a bioinformatics project to organize biological
information around the sequences of large genomes. It is a comprehensive source of stable …

DNA methylation profiling of human chromosomes 6, 20 and 22

…, C Koenig, J Liddle, D Niblett, T Otto, R Pettett… - Nature …, 2006 - nature.com
DNA methylation is the most stable type of epigenetic modification modulating the transcriptional
plasticity of mammalian genomes. Using bisulfite DNA sequencing, we report high-…

The Ensembl genome database project

…, C Melsopp, E Mongin, R Pettett… - Nucleic acids …, 2002 - academic.oup.com
… First, ‘best in genome’ positions for all known human proteins from SPTREMBL (6) are
found using a fast protein to DNA matcher (pmatch, R. Durbin, unpublished software). These …

[HTML][HTML] The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website

…, E Dawson, S Forbes, J Clements, R Pettett… - British journal of …, 2004 - nature.com
The discovery of mutations in cancer genes has advanced our understanding of cancer. These
results are dispersed across the scientific literature and with the availability of the human …

[PDF][PDF] DECIPHER: database of chromosomal imbalance and phenotype in humans using ensembl resources

…, D Rajan, S Van Vooren, Y Moreau, RM Pettett… - The American Journal of …, 2009 - cell.com
Many patients suffering from developmental disorders harbor submicroscopic deletions or
duplications that, by affecting the copy number of dosage-sensitive genes or disrupting normal …

What's in my pot? Real-time species identification on the MinION™

…, A Hurst, X Dai, A Wright, E Kulesha, R Pettett… - BioRxiv, 2015 - biorxiv.org
Whole genome sequencing on next-generation instruments provides an unbiased way to
identify the organisms present in complex metagenomic samples. However, the time-to-result …

Ensembl 2002: accommodating comparative genomics

…, V Iyer, C Melsopp, E Mongin, R Pettett… - Nucleic Acids …, 2003 - academic.oup.com
The Ensembl ( http://www.ensembl.org/ ) database project provides a bioinformatics
framework to organise biology around the sequences of large genomes. It is a comprehensive …

Ensembl 2004

…, C Melsopp, P Meidl, E Mongin, R Pettett… - Nucleic acids …, 2004 - academic.oup.com
The Ensembl ( http://www.ensembl.org/ ) database project provides a bioinformatics framework
to organize biology around the sequences of large genomes. It is a comprehensive and …

ProServer: a simple, extensible Perl DAS server

…, DK Jackson, E Kulesha, J Clements, R Pettett - …, 2007 - academic.oup.com
The increasing size and complexity of biological databases has led to a growing trend to
federate rather than duplicate them. In order to share data between federated databases, …

The Distributed Annotation System for integration of biological data

…, D Jackson, A Kähäri, E Kulesha, R Pettett… - Data Integration in the …, 2006 - Springer
The Distributed Annotation System (DAS) is a protocol for sharing of biological data which
allows for dynamical data integration. It has become widely used in both the genome and …