User profiles for R. Chatrikhi
Rakesh ChatrikhiMassachusetts General Hospital Cancer Center Verified email at mgh.harvard.edu Cited by 433 |
U2AF1 mutations alter sequence specificity of pre-mRNA binding and splicing
We previously identified missense mutations in the U2AF1 splicing factor affecting codons
S34 (S34F and S34Y) or Q157 (Q157R and Q157P) in 11% of the patients with de novo …
S34 (S34F and S34Y) or Q157 (Q157R and Q157P) in 11% of the patients with de novo …
[HTML][HTML] Wild-type U2AF1 antagonizes the splicing program characteristic of U2AF1-mutant tumors and is required for cell survival
We have asked how the common S34F mutation in the splicing factor U2AF1 regulates
alternative splicing in lung cancer, and why wild-type U2AF1 is retained in cancers with this …
alternative splicing in lung cancer, and why wild-type U2AF1 is retained in cancers with this …
[HTML][HTML] An extended U2AF65–RNA-binding domain recognizes the 3′ splice site signal
AA Agrawal, E Salsi, R Chatrikhi, S Henderson… - Nature …, 2016 - nature.com
How the essential pre-mRNA splicing factor U2AF 65 recognizes the polypyrimidine (Py)
signals of the major class of 3′ splice sites in human gene transcripts remains incompletely …
signals of the major class of 3′ splice sites in human gene transcripts remains incompletely …
Alternative splicing redefines landscape of commonly mutated genes in acute myeloid leukemia
…, M Quesnel-Vallières, R Chatrikhi… - Proceedings of the …, 2021 - National Acad Sciences
… The observed correlations are in good agreement between the two datasets (Pearson r = …
Pearson R test was used to determine the correlation coefficients between splicing modules …
Pearson R test was used to determine the correlation coefficients between splicing modules …
[PDF][PDF] RNA binding protein CELF2 regulates signal-induced alternative polyadenylation by competing with enhancers of the polyadenylation machinery
R Chatrikhi, MJ Mallory, MR Gazzara, LM Agosto… - Cell reports, 2019 - cell.com
The 3′ UTR (UTR) of human mRNAs plays a critical role in controlling protein expression
and function. Importantly, 3′ UTRs of human messages are not invariant for each gene but …
and function. Importantly, 3′ UTRs of human messages are not invariant for each gene but …
[PDF][PDF] A synthetic small molecule stalls pre-mRNA splicing by promoting an early-stage U2AF2-RNA complex
R Chatrikhi, CF Feeney, MJ Pulvino, G Alachouzos… - Cell chemical …, 2021 - cell.com
Dysregulated pre-mRNA splicing is an emerging Achilles heel of cancers and myelodysplasias.
To expand the currently limited portfolio of small-molecule drug leads, we screened for …
To expand the currently limited portfolio of small-molecule drug leads, we screened for …
Reciprocal regulation of hnRNP C and CELF2 through translation and transcription tunes splicing activity in T cells
MJ Mallory, SP McClory, R Chatrikhi… - Nucleic acids …, 2020 - academic.oup.com
RNA binding proteins (RBPs) frequently regulate the expression of other RBPs in mammalian
cells. Such cross-regulation has been proposed to be important to control networks of …
cells. Such cross-regulation has been proposed to be important to control networks of …
[PDF][PDF] SF1 phosphorylation enhances specific binding to U2AF65 and reduces binding to 3′-splice-site RNA
Splicing factor 1 (SF1) recognizes 3′ splice sites of the major class of introns as a ternary
complex with U2AF 65 and U2AF 35 splicing factors. A conserved SPSP motif in a coiled-coil …
complex with U2AF 65 and U2AF 35 splicing factors. A conserved SPSP motif in a coiled-coil …
[PDF][PDF] Wild-type Splicing Factor U2AF1 inhibits splicing associated with a recurrent U2AF1 mutant in human lung cancers and is required for cell survival
DL Fei, H Motowski, R Chatrikhi, S Prasad… - …, 2016 - pdfs.semanticscholar.org
… recognition of 3’ splice sites includes a pyrimidine at the -3 position (yAG|r) [19], it was …
cassette (by genomic PCR using the P1-F and P1-R primers as described in … where X is …
cassette (by genomic PCR using the P1-F and P1-R primers as described in … where X is …
Understanding and Modulating RNA Recognition of Myelodysplasia-Relevant Pre-mRNA Splicing Factor U2AF35
R Chatrikhi - 2016 - urresearch.rochester.edu
Recognition of the 3 splice site is a crucial step in pre-mRNA splicing, which is accomplished
by a dynamic complex comprising splicing factor 1 (SF1) and the U2 auxiliary factor …
by a dynamic complex comprising splicing factor 1 (SF1) and the U2 auxiliary factor …