User profiles for R. Aniba
Radhouane ANIBABioinformatics Scientist, BC Cancer Agency Verified email at bccrc.ca Cited by 1334 |
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
Human cancers, including breast cancers, comprise clones differing in mutation content.
Clones evolve dynamically in space and time following principles of Darwinian evolution 1 , 2 , …
Clones evolve dynamically in space and time following principles of Darwinian evolution 1 , 2 , …
Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates
The genomes of large numbers of single cells must be sequenced to further understanding
of the biological significance of genomic heterogeneity in complex systems. Whole genome …
of the biological significance of genomic heterogeneity in complex systems. Whole genome …
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment
The post-genomic era presents many new challenges for the field of bioinformatics. Novel
computational approaches are now being developed to handle the large, complex and noisy …
computational approaches are now being developed to handle the large, complex and noisy …
Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes
We studied the whole-genome point mutation and structural variation patterns of 133 tumors
(59 high-grade serous (HGSC), 35 clear cell (CCOC), 29 endometrioid (ENOC), and 10 …
(59 high-grade serous (HGSC), 35 clear cell (CCOC), 29 endometrioid (ENOC), and 10 …
Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden
Endometriosis is a significant risk factor for clear cell and endometrioid ovarian cancers and
is often found contiguous with these cancers. Using whole‐genome shotgun sequencing of …
is often found contiguous with these cancers. Using whole‐genome shotgun sequencing of …
[HTML][HTML] Interferon β-1a ring prophylaxis to reduce household transmission of SARS-CoV-2: a cluster randomised clinical trial
Background Accumulating evidence indicates that an early, robust type 1 interferon (IFN)
response to SARS-CoV-2 is important in determining COVID-19 outcomes, with an inadequate …
response to SARS-CoV-2 is important in determining COVID-19 outcomes, with an inadequate …
[HTML][HTML] A cluster randomized trial of interferon ß-1a for the reduction of transmission of SARS-Cov-2: protocol for the Containing Coronavirus Disease 19 trial …
C Iturriaga, N Eiffler, R Aniba, R Ben-Othman… - BMC Infectious …, 2021 - Springer
Background SARS-CoV-2 infection rapidly spreads in populations due to the high rates of
community transmission. Interrupting the shedding of SARS-CoV-2 may reduce the incidence …
community transmission. Interrupting the shedding of SARS-CoV-2 may reduce the incidence …
[HTML][HTML] Robust health-score based survival prediction for a neonatal mouse model of polymicrobial sepsis
Infectious disease and sepsis represent a serious problem for all, but especially in early life.
Much of the increase in morbidity and mortality due to infection in early life is presumed to …
Much of the increase in morbidity and mortality due to infection in early life is presumed to …
Kronos: a workflow assembler for genome analytics and informatics
Background: The field of next-generation sequencing informatics has matured to a point
where algorithmic advances in sequence alignment and individual feature detection methods …
where algorithmic advances in sequence alignment and individual feature detection methods …
Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers
J Malin, MR Aniba, S Hannenhalli - Nucleic acids research, 2013 - academic.oup.com
… Next, we assessed enrichment of GO biological processes amongst the targets of an enhancer
cluster using R’s GOstats package. Enhancer clusters also revealed consistently greater …
cluster using R’s GOstats package. Enhancer clusters also revealed consistently greater …