User profiles for R. Aniba

Radhouane ANIBA

Bioinformatics Scientist, BC Cancer Agency
Verified email at bccrc.ca
Cited by 1334

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

…, C Lefebvre, A Bashashati, C de Souza, C Siu, R Aniba… - Nature, 2015 - nature.com
Human cancers, including breast cancers, comprise clones differing in mutation content.
Clones evolve dynamically in space and time following principles of Darwinian evolution 1 , 2 , …

Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates

…, A Bashashati, YF Huang, R Aniba… - Proceedings of the …, 2016 - National Acad Sciences
The genomes of large numbers of single cells must be sequenced to further understanding
of the biological significance of genomic heterogeneity in complex systems. Whole genome …

Issues in bioinformatics benchmarking: the case study of multiple sequence alignment

MR Aniba, O Poch, JD Thompson - Nucleic acids research, 2010 - academic.oup.com
The post-genomic era presents many new challenges for the field of bioinformatics. Novel
computational approaches are now being developed to handle the large, complex and noisy …

Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes

…, J Senz, LM Prentice, AN Karnezis, D Lai, MR Aniba… - Nature …, 2017 - nature.com
We studied the whole-genome point mutation and structural variation patterns of 133 tumors
(59 high-grade serous (HGSC), 35 clear cell (CCOC), 29 endometrioid (ENOC), and 10 …

Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden

…, J Senz, G Ha, W Yang, MR Aniba… - The Journal of …, 2015 - Wiley Online Library
Endometriosis is a significant risk factor for clear cell and endometrioid ovarian cancers and
is often found contiguous with these cancers. Using whole‐genome shotgun sequencing of …

[HTML][HTML] Interferon β-1a ring prophylaxis to reduce household transmission of SARS-CoV-2: a cluster randomised clinical trial

…, V Chen, R Balshaw, R Ben-Othman, R Aniba… - …, 2023 - thelancet.com
Background Accumulating evidence indicates that an early, robust type 1 interferon (IFN)
response to SARS-CoV-2 is important in determining COVID-19 outcomes, with an inadequate …

[HTML][HTML] A cluster randomized trial of interferon ß-1a for the reduction of transmission of SARS-Cov-2: protocol for the Containing Coronavirus Disease 19 trial …

C Iturriaga, N Eiffler, R Aniba, R Ben-Othman… - BMC Infectious …, 2021 - Springer
Background SARS-CoV-2 infection rapidly spreads in populations due to the high rates of
community transmission. Interrupting the shedding of SARS-CoV-2 may reduce the incidence …

[HTML][HTML] Robust health-score based survival prediction for a neonatal mouse model of polymicrobial sepsis

…, N Amenyogbe, R Ben-Othman, TR Kollmann, R Aniba - Plos one, 2019 - journals.plos.org
Infectious disease and sepsis represent a serious problem for all, but especially in early life.
Much of the increase in morbidity and mortality due to infection in early life is presumed to …

Kronos: a workflow assembler for genome analytics and informatics

…, J Rosner, D Grewal, BM Grande, R Aniba… - …, 2017 - academic.oup.com
Background: The field of next-generation sequencing informatics has matured to a point
where algorithmic advances in sequence alignment and individual feature detection methods …

Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers

J Malin, MR Aniba, S Hannenhalli - Nucleic acids research, 2013 - academic.oup.com
… Next, we assessed enrichment of GO biological processes amongst the targets of an enhancer
cluster using R’s GOstats package. Enhancer clusters also revealed consistently greater …