User profiles for R. E. Workman
Rachael E WorkmanPhD student, Johns Hopkins University Verified email at jhmi.edu Cited by 2216 |
Detecting DNA cytosine methylation using nanopore sequencing
In nanopore sequencing devices, electrolytic current signals are sensitive to base modifications,
such as 5-methylcytosine (5-mC). Here we quantified the strength of this effect for the …
such as 5-methylcytosine (5-mC). Here we quantified the strength of this effect for the …
Nanopore native RNA sequencing of a human poly (A) transcriptome
High-throughput complementary DNA sequencing technologies have advanced our
understanding of transcriptome complexity and regulation. However, these methods lose …
understanding of transcriptome complexity and regulation. However, these methods lose …
Nanopore sequencing detects structural variants in cancer
Despite advances in sequencing, structural variants (SVs) remain difficult to reliably detect
due to the short read length (<300 bp) of 2nd generation sequencing. Not only do the reads (…
due to the short read length (<300 bp) of 2nd generation sequencing. Not only do the reads (…
[HTML][HTML] Targeted DNA methylation in human cells using engineered dCas9-methyltransferases
Mammalian genomes exhibit complex patterns of gene expression regulated, in part, by DNA
methylation. The advent of engineered DNA methyltransferases (MTases) to target DNA …
methylation. The advent of engineered DNA methyltransferases (MTases) to target DNA …
High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome
Background The release of the first reference genome of walnut (Juglans regia L.) enabled
many achievements in the characterization of walnut genetic and functional variation. …
many achievements in the characterization of walnut genetic and functional variation. …
[PDF][PDF] A natural single-guide RNA repurposes Cas9 to autoregulate CRISPR-Cas expression
RE Workman, T Pammi, BTK Nguyen, LW Graeff… - Cell, 2021 - cell.com
… We replaced the entire 79 nt segment with a 50-GAAA-30 tetraloop and found that repression
of Pcas was maintained (Figure S3I), suggesting that this region is dispensable for tracr-L …
of Pcas was maintained (Figure S3I), suggesting that this region is dispensable for tracr-L …
Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin
… We saved the output of the longest_path program into a file and resumed the execution of
MaSuRCA by re-running the auto-generated assemble.sh script. We note that in the current …
MaSuRCA by re-running the auto-generated assemble.sh script. We note that in the current …
[PDF][PDF] Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris
RE Workman, AM Myrka, GW Wong, E Tseng… - …, 2018 - academic.oup.com
… Because we considered it likely that an enrichment in lipid metabolic genes could be a re- …
-like transcript noted from Illumina sequencing results. While humans express chitinase in the …
-like transcript noted from Illumina sequencing results. While humans express chitinase in the …
[PDF][PDF] Anti-CRISPR proteins trigger a burst of CRISPR-Cas9 expression that enhances phage defense
RE Workman, MJ Stoltzfus, NC Keith, CW Euler… - Cell Reports, 2024 - cell.com
… pyogenes from phages by (1) limiting the number of infected cells that succumb to lysis or
lysogeny and (2) enhancing the survival of re-infected cells. Our work demonstrates a novel …
lysogeny and (2) enhancing the survival of re-infected cells. Our work demonstrates a novel …
Genomic insights into metabolic flux in hummingbirds
Hummingbirds are very well adapted to sustain efficient and rapid metabolic shifts. They
oxidize ingested nectar to directly fuel flight when foraging but have to switch to oxidizing stored …
oxidize ingested nectar to directly fuel flight when foraging but have to switch to oxidizing stored …