User profiles for R. E. Denroche
Robert DenrocheSenior Bioinformatician, Deep Genomics Verified email at deepgenomics.com Cited by 9591 |
Organoid profiling identifies common responders to chemotherapy in pancreatic cancer
…, FEM Froeling, RA Burkhart, RE Denroche… - Cancer discovery, 2018 - AACR
Pancreatic cancer is the most lethal common solid malignancy. Systemic therapies are often
ineffective, and predictive biomarkers to guide treatment are urgently needed. We …
ineffective, and predictive biomarkers to guide treatment are urgently needed. We …
Genomic hallmarks of localized, non-indolent prostate cancer
…, TA Beck, A Meng, J Zhang, A D'Costa, RE Denroche… - Nature, 2017 - nature.com
… When necessary, samples were re-centred using the Nexus Express TM software, choosing
… For each gene, mRNA abundances were re-normalized and centred by the median across …
… For each gene, mRNA abundances were re-normalized and centred by the median across …
A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
Pancreatic cancer, a highly aggressive tumour type with uniformly poor prognosis,
exemplifies the classically held view of stepwise cancer development 1 . The current model of …
exemplifies the classically held view of stepwise cancer development 1 . The current model of …
Spatial genomic heterogeneity within localized, multifocal prostate cancer
…, MA Chan-Seng-Yue, F Yousif, RE Denroche… - Nature …, 2015 - nature.com
Herein we provide a detailed molecular analysis of the spatial heterogeneity of clinically
localized, multifocal prostate cancer to delineate new oncogenes or tumor suppressors. We …
localized, multifocal prostate cancer to delineate new oncogenes or tumor suppressors. We …
Genomics-driven precision medicine for advanced pancreatic cancer: early results from the COMPASS trial
Purpose: To perform real-time whole genome sequencing (WGS) and RNA sequencing (RNASeq)
of advanced pancreatic ductal adenocarcinoma (PDAC) to identify predictive …
of advanced pancreatic ductal adenocarcinoma (PDAC) to identify predictive …
Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution
… Re-clustering was performed on malignant cells using a method similar to that described
above. Each malignant cluster was scored for the top 100 ranked genes for all Classical- and …
above. Each malignant cluster was scored for the top 100 ranked genes for all Classical- and …
GATA6 expression distinguishes classical and basal-like subtypes in advanced pancreatic cancer
…, S Picardo, RC Grant, RE Denroche… - Clinical Cancer …, 2020 - AACR
Purpose: To determine the impact of basal-like and classical subtypes in advanced
pancreatic ductal adenocarcinoma (PDAC) and to explore GATA6 expression as a surrogate …
pancreatic ductal adenocarcinoma (PDAC) and to explore GATA6 expression as a surrogate …
[HTML][HTML] A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
… ‘mixed-type inhibition’ of mutation detection sensitivity, which we examined by mixing
increasing proportions of normal sequence reads (17, 33 and 50%) into the tumour data set and re-…
increasing proportions of normal sequence reads (17, 33 and 50%) into the tumour data set and re-…
Association of distinct mutational signatures with correlates of increased immune activity in pancreatic ductal adenocarcinoma
AA Connor, RE Denroche, GH Jang, L Timms… - JAMA …, 2017 - jamanetwork.com
Importance Outcomes for patients with pancreatic ductal adenocarcinoma (PDAC) remain
poor. Advances in next-generation sequencing provide a route to therapeutic approaches, …
poor. Advances in next-generation sequencing provide a route to therapeutic approaches, …
[PDF][PDF] Integration of genomic and transcriptional features in pancreatic cancer reveals increased cell cycle progression in metastases
AA Connor, RE Denroche, GH Jang, M Lemire… - Cancer cell, 2019 - cell.com
We integrated clinical, genomic, and transcriptomic data from 224 primaries and 95 metastases
from 289 patients to characterize progression of pancreatic ductal adenocarcinoma (…
from 289 patients to characterize progression of pancreatic ductal adenocarcinoma (…