User profiles for P. Tataru

Paula Tataru

Senior Bioinformatics Scientist, Qiagen
Verified email at qiagen.com
Cited by 599

Statistical inference in the Wright–Fisher model using allele frequency data

P Tataru, M Simonsen, T Bataillon… - Systematic …, 2017 - academic.oup.com
… Here, |${\rm Bin}(n,\, p)$| is the binomial distribution with sample size |$n$| and probability
|$… The truncated normal, beta and beta with spikes are discretized as in Tataru et al. (2015). …

[HTML][HTML] Cable bacteria with electric connection to oxygen attract flocks of diverse bacteria

…, AJ Mueller, S Brokjær, CA Thorup, P Tataru… - Nature …, 2023 - nature.com
Cable bacteria are centimeter-long filamentous bacteria that conduct electrons via internal
wires, thus coupling sulfide oxidation in deeper, anoxic sediment with oxygen reduction in …

Inference of distribution of fitness effects and proportion of adaptive substitutions from polymorphism data

P Tataru, M Mollion, S Glémin, T Bataillon - Genetics, 2017 - academic.oup.com
… correlation between the proportion of beneficial mutations p b and their scaled selection
coefficient S b (Figure S4 in File S1). This illustrates the fact that p b and S b are difficult to …

Long-distance electron transport in individual, living cable bacteria

…, D Berry, M Schmid, D Millo, P Tataru… - Proceedings of the …, 2018 - National Acad Sciences
… n = 10 filaments (1,143 spectra, Shapiro–Wilk test P value: 0.117, t-test P value: 0.000517)
and n = 5 control filaments (852 spectra, Shapiro–Wilk test P value: 0.84, t-test P value: 0.879)…

Comparison of the full distribution of fitness effects of new amino acid mutations across great apes

D Castellano, MC Macià, P Tataru, T Bataillon… - Genetics, 2019 - academic.oup.com
… additive deleterious mutations (s ≤ 0), b is the shape parameter of the deleterious DFE, S
b is the mean population scaled selection coefficient of new additive beneficial mutations, p b …

polyDFEv2. 0: testing for invariance of the distribution of fitness effects within and across species

P Tataru, T Bataillon - Bioinformatics, 2019 - academic.oup.com
Distribution of fitness effects (DFE) of mutations can be inferred from site frequency spectrum
(SFS) data. There is mounting interest to determine whether distinct genomic regions and/…

[HTML][HTML] Evolving stochastic context-free grammars for RNA secondary structure prediction

J WJ Anderson, P Tataru, J Staines, J Hein… - BMC bioinformatics, 2012 - Springer
… as P b b ̂ → a P a â â for nucleotides a , â , b , b ̂ ). This suggested that a computational
search of a large space of grammars might find stronger grammars, which is what we have …

Inference under a Wright-Fisher model using an accurate beta approximation

P Tataru, T Bataillon, A Hobolth - Genetics, 2015 - academic.oup.com
The large amount and high quality of genomic data available today enable, in principle,
accurate inference of evolutionary histories of observed populations. The Wright-Fisher model is …

[HTML][HTML] Conjunctival flap surgery in the management of ocular surface disease

M Zemba, AC Stamate, CP Tataru… - Experimental and …, 2020 - spandidos-publications.com
Literature regarding conjunctival flap surgery was reviewed to describe and discuss the
rationale for this type of procedure. The conjunctival flap is an acknowledged surgery for the …

[HTML][HTML] Update on surgical management of corneal ulceration and perforation

AC Stamate, CP Tătaru, M Zemba - Romanian journal of …, 2019 - ncbi.nlm.nih.gov
Corneal ulcerations are a medical emergency, and in recalcitrant cases, leading to
perforation, a surgical ophthalmological emergency. The urgency of the treatment is dictated …