User profiles for P. Ribeca

Paolo Ribeca

Biomathematics and Statistics Scotland, UK
Verified email at bioss.ac.uk
Cited by 31311

[HTML][HTML] Landscape of transcription in human cells

…, OJ Luo, E Park, K Persaud, JB Preall, P Ribeca… - Nature, 2012 - nature.com
Eukaryotic cells make many types of primary and processed RNAs that are found either in
specific subcellular compartments or throughout the cells. A complete catalogue of these …

Transcriptome and genome sequencing uncovers functional variation in humans

…, T Wieland, L Greger, M van Iterson, J Almlöf, P Ribeca… - Nature, 2013 - nature.com
P value of the sites with significant (P < 0.005) ASE in the same individual, and vice versa.
The ASE P-… The numbers denote the (1 – Storey’s ) statistic measuring the enrichment of low P

From useful algorithms for slowly convergent series to physical predictions based on divergent perturbative expansions

E Caliceti, M Meyer-Hermann, P Ribeca, A Surzhykov… - Physics reports, 2007 - Elsevier
This review is focused on the borderline region of theoretical physics and mathematics. First,
we describe numerical methods for the acceleration of the convergence of series. These …

The GEM mapper: fast, accurate and versatile alignment by filtration

S Marco-Sola, M Sammeth, R Guigó, P Ribeca - Nature methods, 2012 - nature.com
Because of ever-increasing throughput requirements of sequencing data, most existing short-read
aligners have been designed to focus on speed at the expense of accuracy. The …

[HTML][HTML] Fast computation and applications of genome mappability

…, DG Knowles, E Raineri, R Guigó, P Ribeca - PloS one, 2012 - journals.plos.org
We present a fast mapping-based algorithm to compute the mappability of each region of a
reference genome up to a specified number of mismatches. Knowing the mappability of a …

[HTML][HTML] A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing

…, L Stebbings, JW Teague, P Ribeca… - Nature …, 2015 - nature.com
As whole-genome sequencing for cancer genome analysis becomes a clinical tool, a full
understanding of the variables affecting sequencing analysis output is required. Here using …

Modelling and simulating generic RNA-Seq experiments with the flux simulator

T Griebel, B Zacher, P Ribeca, E Raineri… - Nucleic acids …, 2012 - academic.oup.com
High-throughput sequencing of cDNA libraries constructed from cellular RNA complements (RNA-Seq)
naturally provides a digital quantitative measurement for every expressed RNA …

Genome sequence of the olive tree, Olea europaea

…, E Cano, B Galán, L Frias, P Ribeca… - …, 2016 - academic.oup.com
… Frias and P. Ribeca, manuscript in preparation; scripts are publicly available at [14]. Two
rounds of merging were performed, with intermediate scaffolding and gapfilling steps. In the first …

[HTML][HTML] Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

…, G Li, F García, M Rubio-Camarillo, L Frias, P Ribeca… - Genome biology, 2016 - Springer
Background Genomic studies of endangered species provide insights into their evolution and
demographic history, reveal patterns of genomic erosion that might limit their viability, and …

Networks of Ethereum Non-Fungible Tokens: A graph-based analysis of the ERC-721 ecosystem

S Casale-Brunet, P Ribeca, P Doyle… - 2021 IEEE …, 2021 - ieeexplore.ieee.org
Non-fungible tokens (NFTs) as a decentralized proof of ownership represent one of the main
reasons why Ethereum is a disruptive technology. This paper presents the first systematic …