User profiles for P. Ribeca
Paolo RibecaBiomathematics and Statistics Scotland, UK Verified email at bioss.ac.uk Cited by 31311 |
[HTML][HTML] Landscape of transcription in human cells
Eukaryotic cells make many types of primary and processed RNAs that are found either in
specific subcellular compartments or throughout the cells. A complete catalogue of these …
specific subcellular compartments or throughout the cells. A complete catalogue of these …
Transcriptome and genome sequencing uncovers functional variation in humans
… P value of the sites with significant (P < 0.005) ASE in the same individual, and vice versa.
The ASE P-… The numbers denote the (1 – Storey’s ) statistic measuring the enrichment of low P …
The ASE P-… The numbers denote the (1 – Storey’s ) statistic measuring the enrichment of low P …
From useful algorithms for slowly convergent series to physical predictions based on divergent perturbative expansions
This review is focused on the borderline region of theoretical physics and mathematics. First,
we describe numerical methods for the acceleration of the convergence of series. These …
we describe numerical methods for the acceleration of the convergence of series. These …
The GEM mapper: fast, accurate and versatile alignment by filtration
Because of ever-increasing throughput requirements of sequencing data, most existing short-read
aligners have been designed to focus on speed at the expense of accuracy. The …
aligners have been designed to focus on speed at the expense of accuracy. The …
[HTML][HTML] Fast computation and applications of genome mappability
We present a fast mapping-based algorithm to compute the mappability of each region of a
reference genome up to a specified number of mismatches. Knowing the mappability of a …
reference genome up to a specified number of mismatches. Knowing the mappability of a …
[HTML][HTML] A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
As whole-genome sequencing for cancer genome analysis becomes a clinical tool, a full
understanding of the variables affecting sequencing analysis output is required. Here using …
understanding of the variables affecting sequencing analysis output is required. Here using …
Modelling and simulating generic RNA-Seq experiments with the flux simulator
High-throughput sequencing of cDNA libraries constructed from cellular RNA complements (RNA-Seq)
naturally provides a digital quantitative measurement for every expressed RNA …
naturally provides a digital quantitative measurement for every expressed RNA …
Genome sequence of the olive tree, Olea europaea
… Frias and P. Ribeca, manuscript in preparation; scripts are publicly available at [14]. Two
rounds of merging were performed, with intermediate scaffolding and gapfilling steps. In the first …
rounds of merging were performed, with intermediate scaffolding and gapfilling steps. In the first …
[HTML][HTML] Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
Background Genomic studies of endangered species provide insights into their evolution and
demographic history, reveal patterns of genomic erosion that might limit their viability, and …
demographic history, reveal patterns of genomic erosion that might limit their viability, and …
Networks of Ethereum Non-Fungible Tokens: A graph-based analysis of the ERC-721 ecosystem
S Casale-Brunet, P Ribeca, P Doyle… - 2021 IEEE …, 2021 - ieeexplore.ieee.org
Non-fungible tokens (NFTs) as a decentralized proof of ownership represent one of the main
reasons why Ethereum is a disruptive technology. This paper presents the first systematic …
reasons why Ethereum is a disruptive technology. This paper presents the first systematic …