User profiles for P. H. Sudmant

Peter H Sudmant

University of California Berkeley
Verified email at berkeley.edu
Cited by 34149

The complete genome sequence of a Neanderthal from the Altai Mountains

…, S Sawyer, A Heinze, G Renaud, PH Sudmant… - Nature, 2014 - nature.com
We present a high-quality genome sequence of a Neanderthal woman from Siberia. We
show that her parents were related at the level of half-siblings and that mating among close …

[HTML][HTML] An integrated map of structural variation in 2,504 human genomes

PH Sudmant, T Rausch, EJ Gardner, RE Handsaker… - Nature, 2015 - nature.com
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …

A high-coverage genome sequence from an archaic Denisovan individual

…, F Jay, K Prüfer, C De Filippo, PH Sudmant… - Science, 2012 - science.org
We present a DNA library preparation method that has allowed us to reconstruct a high-coverage
(30×) genome sequence of a Denisovan, an extinct relative of Neandertals. The quality …

Ancient human genomes suggest three ancestral populations for present-day Europeans

…, G Renaud, S Mallick, K Kirsanow, PH Sudmant… - Nature, 2014 - nature.com
We sequenced the genomes of a ∼7,000-year-old farmer from Germany and eight ∼8,000-year-old
hunter-gatherers from Luxembourg and Sweden. We analysed these and other …

[HTML][HTML] Great ape genetic diversity and population history

J Prado-Martinez, PH Sudmant, JM Kidd, H Li… - Nature, 2013 - nature.com
Most great ape genetic variation remains uncharacterized 1 , 2 ; however, its study is critical
for understanding population history 3 , 4 , 5 , 6 , recombination 7 , selection 8 and …

Resolving the complexity of the human genome using single-molecule sequencing

MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant… - Nature, 2015 - nature.com
The human genome is arguably the most complete mammalian reference assembly 1 , 2 , 3
, yet more than 160 euchromatic gaps remain 4 , 5 , 6 and aspects of its structural variation …

Diversity of human copy number variation and multicopy genes

PH Sudmant, JO Kitzman, F Antonacci, C Alkan… - Science, 2010 - science.org
Copy number variants affect both disease and normal phenotypic variation, but those lying
within heavily duplicated, highly identical sequence have been difficult to assay. By analyzing …

Copy number variation detection and genotyping from exome sequence data

N Krumm, PH Sudmant, A Ko, BJ O'Roak… - Genome …, 2012 - genome.cshlp.org
… When we examined 378 of these 481 calls for which whole-genome absolute copy number
estimates were available (Sudmant et al. 2010), we find that the SVD-ZRPKM signal at 222/…

[HTML][HTML] Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication

MY Dennis, X Nuttle, PH Sudmant, F Antonacci… - Cell, 2012 - cell.com
Gene duplication is an important source of phenotypic change and adaptive evolution. We
leverage a haploid hydatidiform mole to identify highly identical sequences missing from the …

Global diversity, population stratification, and selection of human copy-number variation

PH Sudmant, S Mallick, BJ Nelson, F Hormozdiari… - Science, 2015 - science.org
INTRODUCTION Most studies of human genetic variation have focused on single-nucleotide
variants (SNVs). However, copy-number variants (CNVs) affect more base pairs of DNA …