User profiles for P. A. Brodskiy

Pavel A. Brodskiy

Machine Learning Engineer, Iterative Scopes
Verified email at iterativescopes.com
Cited by 372

Calcium as a signal integrator in developing epithelial tissues

PA Brodskiy, JJ Zartman - Physical biology, 2018 - iopscience.iop.org
Decoding how tissue properties emerge across multiple spatial and temporal scales from
the integration of local signals is a grand challenge in quantitative biology. For example, the …

[PDF][PDF] Decoding calcium signaling dynamics during Drosophila wing disc development

PA Brodskiy, Q Wu, DK Soundarrajan, FJ Huizar… - Biophysical journal, 2019 - cell.com
The robust specification of organ development depends on coordinated cell-cell communication.
This process requires signal integration among multiple pathways, relying on second …

[HTML][HTML] Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia

A Nematbakhsh, W Sun, PA Brodskiy… - PLoS computational …, 2017 - journals.plos.org
Mitotic rounding during cell division is critical for preventing daughter cells from inheriting an
abnormal number of chromosomes, a condition that occurs frequently in cancer cells. Cells …

[HTML][HTML] Capabilities and limitations of tissue size control through passive mechanical forces

J Kursawe, PA Brodskiy, JJ Zartman… - PLoS computational …, 2015 - journals.plos.org
Embryogenesis is an extraordinarily robust process, exhibiting the ability to control tissue
size and repair patterning defects in the face of environmental and genetic perturbations. The …

High throughput characterization of adult stem cells engineered for delivery of therapeutic factors for neuroprotective strategies

AD Sharma, PA Brodskiy, EM Petersen… - JoVE (Journal of …, 2015 - jove.com
Mesenchymal stem cells (MSCs) derived from bone marrow are a powerful cellular resource
and have been used in numerous studies as potential candidates to develop strategies for …

[HTML][HTML] MAPPER: An Open-Source, High-Dimensional Image Analysis Pipeline Unmasks Differential Regulation of Drosophila Wing Features

N Kumar, FJ Huizar, PA Brodskiy, M Nahmad… - Frontiers in …, 2022 - frontiersin.org
Phenomics requires quantification of large volumes of image data, necessitating high
throughput image processing approaches. Existing image processing pipelines for Drosophila …

A new registration approach for dynamic analysis of calcium signals in organs

P Liang, J Chen, PA Brodskiy, Q Wu… - 2018 IEEE 15th …, 2018 - ieeexplore.ieee.org
Wing disc pouches of fruit flies are a powerful genetic model for studying physiological
intercellular calcium (Ca 2+ ) signals for dynamic analysis of cell signaling in organ development …

[HTML][HTML] Molecular and cellular characterization of a zebrafish optic pathway tumor line implicates glia-derived progenitors in tumorigenesis

…, J Mauldin, LE Schultz, DE Lincow, PA Brodskiy… - PloS one, 2014 - journals.plos.org
In this study we describe the molecular and cellular characterization of a zebrafish mutant
that develops tumors in the optic pathway. Heterozygous Tg(flk1:RFP)is18 transgenic adults …

In vivo relevance of intercellular calcium signaling in Drosophila wing development

Q Wu, PA Brodskiy, F Huizar, JJ Jangula, C Narciso… - BioRxiv, 2017 - biorxiv.org
Recently, organ-scale intercellular Ca 2+ transients (ICTs) were reported in the Drosophila
wing disc. However, the functional in vivo significance of ICTs remains largely unknown. Here …

QuickStitch for seamless stitching of confocal mosaics through high-pass filtering and recursive normalization

PA Brodskiy, PM Eberts, C Narciso, J Kursawe… - bioRxiv, 2016 - biorxiv.org
Fluorescence micrographs naturally exhibit darkening around their edges (vignetting), which
makes seamless stitching challenging. If vignetting is not corrected for, a stitched image will …