User profiles for P. A. Brodskiy
Pavel A. BrodskiyMachine Learning Engineer, Iterative Scopes Verified email at iterativescopes.com Cited by 372 |
Calcium as a signal integrator in developing epithelial tissues
PA Brodskiy, JJ Zartman - Physical biology, 2018 - iopscience.iop.org
Decoding how tissue properties emerge across multiple spatial and temporal scales from
the integration of local signals is a grand challenge in quantitative biology. For example, the …
the integration of local signals is a grand challenge in quantitative biology. For example, the …
[PDF][PDF] Decoding calcium signaling dynamics during Drosophila wing disc development
The robust specification of organ development depends on coordinated cell-cell communication.
This process requires signal integration among multiple pathways, relying on second …
This process requires signal integration among multiple pathways, relying on second …
[HTML][HTML] Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia
A Nematbakhsh, W Sun, PA Brodskiy… - PLoS computational …, 2017 - journals.plos.org
Mitotic rounding during cell division is critical for preventing daughter cells from inheriting an
abnormal number of chromosomes, a condition that occurs frequently in cancer cells. Cells …
abnormal number of chromosomes, a condition that occurs frequently in cancer cells. Cells …
[HTML][HTML] Capabilities and limitations of tissue size control through passive mechanical forces
Embryogenesis is an extraordinarily robust process, exhibiting the ability to control tissue
size and repair patterning defects in the face of environmental and genetic perturbations. The …
size and repair patterning defects in the face of environmental and genetic perturbations. The …
High throughput characterization of adult stem cells engineered for delivery of therapeutic factors for neuroprotective strategies
AD Sharma, PA Brodskiy, EM Petersen… - JoVE (Journal of …, 2015 - jove.com
Mesenchymal stem cells (MSCs) derived from bone marrow are a powerful cellular resource
and have been used in numerous studies as potential candidates to develop strategies for …
and have been used in numerous studies as potential candidates to develop strategies for …
[HTML][HTML] MAPPER: An Open-Source, High-Dimensional Image Analysis Pipeline Unmasks Differential Regulation of Drosophila Wing Features
Phenomics requires quantification of large volumes of image data, necessitating high
throughput image processing approaches. Existing image processing pipelines for Drosophila …
throughput image processing approaches. Existing image processing pipelines for Drosophila …
A new registration approach for dynamic analysis of calcium signals in organs
Wing disc pouches of fruit flies are a powerful genetic model for studying physiological
intercellular calcium (Ca 2+ ) signals for dynamic analysis of cell signaling in organ development …
intercellular calcium (Ca 2+ ) signals for dynamic analysis of cell signaling in organ development …
[HTML][HTML] Molecular and cellular characterization of a zebrafish optic pathway tumor line implicates glia-derived progenitors in tumorigenesis
…, J Mauldin, LE Schultz, DE Lincow, PA Brodskiy… - PloS one, 2014 - journals.plos.org
In this study we describe the molecular and cellular characterization of a zebrafish mutant
that develops tumors in the optic pathway. Heterozygous Tg(flk1:RFP)is18 transgenic adults …
that develops tumors in the optic pathway. Heterozygous Tg(flk1:RFP)is18 transgenic adults …
In vivo relevance of intercellular calcium signaling in Drosophila wing development
Q Wu, PA Brodskiy, F Huizar, JJ Jangula, C Narciso… - BioRxiv, 2017 - biorxiv.org
Recently, organ-scale intercellular Ca 2+ transients (ICTs) were reported in the Drosophila
wing disc. However, the functional in vivo significance of ICTs remains largely unknown. Here …
wing disc. However, the functional in vivo significance of ICTs remains largely unknown. Here …
QuickStitch for seamless stitching of confocal mosaics through high-pass filtering and recursive normalization
PA Brodskiy, PM Eberts, C Narciso, J Kursawe… - bioRxiv, 2016 - biorxiv.org
Fluorescence micrographs naturally exhibit darkening around their edges (vignetting), which
makes seamless stitching challenging. If vignetting is not corrected for, a stitched image will …
makes seamless stitching challenging. If vignetting is not corrected for, a stitched image will …