Local fitness landscape of the green fluorescent protein
…, NG Bozhanova, MS Baranov, O Soylemez… - Nature, 2016 - nature.com
Fitness landscapes 1 , 2 depict how genotypes manifest at the phenotypic level and form the
basis of our understanding of many areas of biology 2 , 3 , 4 , 5 , 6 , 7 , yet their properties …
basis of our understanding of many areas of biology 2 , 3 , 4 , 5 , 6 , 7 , yet their properties …
Antioxidant Activity of Syringic Acid Prevents Oxidative Stress in l-arginine–Induced Acute Pancreatitis: An Experimental Study on Rats
O Cikman, O Soylemez, OF Ozkan… - International …, 2015 - meridian.allenpress.com
The aim of this study was to investigate the possible protective role of antioxidant treatment
with syringic acid (SA) on l-arginine–induced acute pancreatitis (AP) using biochemical and …
with syringic acid (SA) on l-arginine–induced acute pancreatitis (AP) using biochemical and …
Structure and evolutionary history of a large family of NLR proteins in the zebrafish
…, GK Laird, JC Marioni, O Soylemez… - Open …, 2016 - royalsocietypublishing.org
… NACHT domain) in the dataset using Clustal–Omega, (ii) constructed a phylogeny using a
… our phylogeny on an alignment calculated with Clustal–Omega v. 1.2, reduced to conserved …
… our phylogeny on an alignment calculated with Clustal–Omega v. 1.2, reduced to conserved …
Radioprotective effects of Nigella sativa oil against oxidative stress in liver tissue of rats exposed to total head irradiation
O Cikman, A Ozkan, AB Aras, O Soylemez… - Journal of …, 2014 - Taylor & Francis
Objective: Many cancer patients treated with radiotherapy suffer severe side effects during
and after their treatment. The aim of this study was to investigate the effects of irradiation and …
and after their treatment. The aim of this study was to investigate the effects of irradiation and …
Facial emotion recognition on a dataset using convolutional neural network
Nowadays, deep learning is a technique that takes place in many computer vision related
applications and studies. While it is put in the practice mostly on content based image retrieval, …
applications and studies. While it is put in the practice mostly on content based image retrieval, …
[HTML][HTML] An integrated clinical program and crowdsourcing strategy for genomic sequencing and Mendelian disease gene discovery
…, S Lincoln, S Lucia, VA Gupta, O Söylemez… - NPJ genomic …, 2018 - nature.com
Despite major progress in defining the genetic basis of Mendelian disorders, the molecular
etiology of many cases remains unknown. Patients with these undiagnosed disorders often …
etiology of many cases remains unknown. Patients with these undiagnosed disorders often …
Low-frequency inherited complement receptor variants are associated with purpura fulminans
…, O Söylemez, A Robbins, B Rouaisnel, JK O'Neil… - Blood, 2024 - ashpublications.org
Extreme disease phenotypes can provide key insights into the pathophysiology of common
conditions, but studying such cases is challenging due to their rarity and the limited statistical …
conditions, but studying such cases is challenging due to their rarity and the limited statistical …
Estimating the rate of irreversibility in protein evolution
O Soylemez, FA Kondrashov - Genome Biology and Evolution, 2012 - academic.oup.com
Whether or not evolutionary change is inherently irreversible remains a controversial topic.
Some examples of evolutionary irreversibility are known; however, this question has not been …
Some examples of evolutionary irreversibility are known; however, this question has not been …
Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
CA Kretz, M Dai, O Soylemez, A Yee… - Proceedings of the …, 2015 - National Acad Sciences
Proteases play important roles in many biologic processes and are key mediators of cancer,
inflammation, and thrombosis. However, comprehensive and quantitative techniques to …
inflammation, and thrombosis. However, comprehensive and quantitative techniques to …
Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy
The influence of genetic background on driver mutations is well established; however, the
mechanisms by which the background interacts with Mendelian loci remain unclear. We …
mechanisms by which the background interacts with Mendelian loci remain unclear. We …