[HTML][HTML] Integration of metabolomics data into metabolic networks
N Töpfer, S Kleessen, Z Nikoloski - Frontiers in plant science, 2015 - frontiersin.org
Metabolite levels together with their corresponding metabolic fluxes are integrative
outcomes of biochemical transformations and regulatory processes and they can be used to …
outcomes of biochemical transformations and regulatory processes and they can be used to …
The PhytoClust tool for metabolic gene clusters discovery in plant genomes
The existence of Metabolic Gene Clusters (MGCs) in plant genomes has recently raised
increased interest. Thus far, MGCs were commonly identified for pathways of specialized …
increased interest. Thus far, MGCs were commonly identified for pathways of specialized …
Alternative crassulacean acid metabolism modes provide environment-specific water-saving benefits in a leaf metabolic model
… In this study, we considered the metabolism of a mature source leaf under field conditions
(ie, a metabolic system that functions to assimilate C and N and to synthesize sugars and …
(ie, a metabolic system that functions to assimilate C and N and to synthesize sugars and …
Atorvastatin induces autophagy in prostate cancer PC3 cells through activation of LC3 transcription
N Toepfer, C Childress, A Parikh… - Cancer biology & …, 2011 - Taylor & Francis
Our previous studies have demonstrated that atorvastatin induces autophagy in the
androgen receptor negative prostate cancer PC3 cells through inhibition of geranylgeranyl …
androgen receptor negative prostate cancer PC3 cells through inhibition of geranylgeranyl …
[HTML][HTML] Advances in flux balance analysis by integrating machine learning and mechanism-based models
The availability of multi-omics data sets and genome-scale metabolic models for various
organisms provide a platform for modeling and analyzing genotype-to-phenotype relationships. …
organisms provide a platform for modeling and analyzing genotype-to-phenotype relationships. …
[HTML][HTML] Metabolite profiling and integrative modeling reveal metabolic constraints for carbon partitioning under nitrogen starvation in the green algae Haematococcus …
L Recht, N Töpfer, A Batushansky, N Sikron… - Journal of Biological …, 2014 - ASBMB
The green alga Hematococcus pluvialis accumulates large amounts of the antioxidant
astaxanthin under inductive stress conditions, such as nitrogen starvation. The response to …
astaxanthin under inductive stress conditions, such as nitrogen starvation. The response to …
SarcTrack: an adaptable software tool for efficient large-scale analysis of sarcomere function in hiPSC-cardiomyocytes
Rationale: Human induced pluripotent stem cell–derived cardiomyocytes (hiPSC-CMs) in
combination with CRISPR/Cas9 genome editing provide unparalleled opportunities to study …
combination with CRISPR/Cas9 genome editing provide unparalleled opportunities to study …
Label‐free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development
…, L Chappell‐Maor, U Heinig, N Töpfer… - The Plant …, 2017 - Wiley Online Library
Current innovations in mass‐spectrometry‐based technologies allow deep coverage of protein
expression. Despite its immense value and in contrast to transcriptomics, only a handful …
expression. Despite its immense value and in contrast to transcriptomics, only a handful …
Genetic variants associated with cancer therapy–induced cardiomyopathy
…, IG Lunde, H Wakimoto, AM Smith, CN Toepfer… - Circulation, 2019 - Am Heart Assoc
Background: Cancer therapy–induced cardiomyopathy (CCM) is associated with cumulative
drug exposures and preexisting cardiovascular disorders. These parameters incompletely …
drug exposures and preexisting cardiovascular disorders. These parameters incompletely …
Long-term effects of telephone-based cognitive-behavioral intervention for family caregivers of people with dementia: Findings at 3-year follow-up.
NF Töpfer, MC Sittler… - Journal of Consulting …, 2021 - psycnet.apa.org
Introduction: Long-term outcomes are of particular importance in evaluating interventions for
family caregivers of people with dementia (PwD). So far, evidence for long-term effects (> 6 …
family caregivers of people with dementia (PwD). So far, evidence for long-term effects (> 6 …