Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice

…, I Kagawa, S Kondo, H Konno, A Miyazaki, N Osato… - science, 2003 - science.org
We collected and completely sequenced 28,469 full-length complementary DNA clones
from Oryza sativa L. ssp. japonica cv. Nipponbare. Through homology searches of publicly …

Comprehensive Analysis of NAC Family Genes in Oryza sativa and Arabidopsis thaliana

…, Y Otomo, K Murakami, K Matsubara, N Osato… - DNA …, 2003 - academic.oup.com
… 7 that is located in the N-terminal region and is divided into five subdomains (A to E) (Fig.
1). … We thought that structural analysis of the NAC domains (N-terminal regions) was not …

Essential role of the IRF8-KLF4 transcription factor cascade in murine monocyte differentiation

D Kurotaki, N Osato, A Nishiyama… - Blood, The Journal …, 2013 - ashpublications.org
Monocytes regulate host defenses, inflammation, and tissue homeostasis. The transcription
factor interferon regulatory factor-8 (IRF8) stimulates monocyte/macrophage differentiation, …

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

…, H Ohyanagi, T Okido, S OOta, N Osato… - Genome …, 2007 - genome.cshlp.org
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica
cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (…

Antisense transcripts with FANTOM2 clone set and their implications for gene regulation

H Kiyosawa, I Yamanaka, N Osato, S Kondo… - Genome …, 2003 - genome.cshlp.org
We have used the FANTOM2 mouse cDNA set (60,770 clones), public mRNA data, and
mouse genome sequence data to identify 2481 pairs of sense–antisense transcripts and 899 …

Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7and synembryn-like

S Nagayoshi, E Hayashi, G Abe, N Osato, K Asakawa… - 2008 - journals.biologists.com
… The longest transcript had a capacity to produce a truncated protein of 44 amino acids
containing the N-terminal region of Tcf7, which is unlikely to be functional. Then, we performed RT-…

Transcriptional Interferences in cis Natural Antisense Transcripts of Humans and Mice

N Osato, Y Suzuki, K Ikeo, T Gojobori - Genetics, 2007 - academic.oup.com
For a significant fraction of mRNAs, their expression is regulated by other RNAs, including
cis natural antisense transcripts (cis-NATs) that are complementary mRNAs transcribed from …

A genome-wide and nonredundant mouse transcription factor database

M Kanamori, H Konno, N Osato, J Kawai… - Biochemical and …, 2004 - Elsevier
Here we describe the development of a genome-wide and nonredundant mouse transcription
factor database and its viewer (). We systematically selected transcription factors with DNA-…

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

…, S Kondo, Y Sugahara, R Saito, N Osato… - Genome …, 2003 - genome.cshlp.org
We report the construction of the mouse full-length cDNA encyclopedia, the most extensive
view of a complex transcriptome, on the basis of preparing and sequencing 246 libraries. …

The evolutionary emergence of cell type-specific genes inferred from the gene expression analysis of Hydra

…, H Ohyanagi, S Hayakawa, N Osato… - Proceedings of the …, 2007 - National Acad Sciences
Cell lineages of cnidarians including Hydra represent the fundamental cell types of metazoans
and provides us a unique opportunity to study the evolutionary diversification of cell type …