User profiles for N. Kyrpides

Nikos C Kyrpides

Joint Genome Institute, Lawrence Berkeley National Laboratory
Verified email at lbl.gov
Cited by 83480

[HTML][HTML] Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

RM Bowers, NC Kyrpides, R Stepanauskas… - Nature …, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …

The minimum information about a genome sequence (MIGS) specification

…, R Kottmann, E Kolker, S Kravitz, N Kyrpides… - Nature …, 2008 - nature.com
With the quantity of genomic data increasing at an exponential rate, it is imperative that
these data be captured electronically, in a standard format. Standardization activities must …

IMG ER: a system for microbial genome annotation expert review and curation

…, NN Ivanova, IMA Chen, K Chu, NC Kyrpides - …, 2009 - academic.oup.com
Motivation: A rapidly increasing number of microbial genomes are sequenced by organizations
worldwide and are eventually included into various public genome data resources. The …

[HTML][HTML] Insights into the phylogeny and coding potential of microbial dark matter

…, SM Sievert, WT Liu, JA Eisen, SJ Hallam, NC Kyrpides… - Nature, 2013 - nature.com
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However, …

The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

…, AR Kerlavage, DE Graham, NC Kyrpides… - Nature, 1997 - nature.com
Archaeoglobus fulgidus is the first sulphur-metabolizing organism to have its genome sequence
determined. Its genome of 2,178,400 base pairs contains 2,436 open reading frames (…

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

…, A Salamov, K Barry, N Mikhailova, NC Kyrpides… - Nature, 2007 - nature.com
… New insights into other important symbiotic functions including H 2 metabolism, CO 2 -reductive
acetogenesis and N 2 fixation are also provided by this first system-wide gene analysis …

IMG: the integrated microbial genomes database and comparative analysis system

…, K Mavromatis, NN Ivanova, NC Kyrpides - Nucleic acids …, 2012 - academic.oup.com
The Integrated Microbial Genomes (IMG) system serves as a community resource for
comparative analysis of publicly available genomes in a comprehensive integrated context. IMG …

[HTML][HTML] A unified catalog of 204,938 reference genomes from the human gut microbiome

…, DH Parks, P Hugenholtz, N Segata, NC Kyrpides… - Nature …, 2021 - nature.com
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …

[HTML][HTML] Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis

…, M Fonstein, S Dusko Ehrlich, R Overbeek, N Kyrpides - Nature, 2003 - nature.com
Bacillus cereus is an opportunistic pathogen causing food poisoning manifested by diarrhoeal
or emetic syndromes 1 . It is closely related to the animal and human pathogen Bacillus …

[HTML][HTML] A genomic catalog of Earth's microbiomes

…, NJ Mouncey, NN Ivanova, NC Kyrpides… - Nature …, 2021 - nature.com
The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has
enabled insights into the ecology and evolution of environmental and host-associated …