User profiles for N. Kyrpides
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National Laboratory Verified email at lbl.gov Cited by 83480 |
[HTML][HTML] Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
The minimum information about a genome sequence (MIGS) specification
With the quantity of genomic data increasing at an exponential rate, it is imperative that
these data be captured electronically, in a standard format. Standardization activities must …
these data be captured electronically, in a standard format. Standardization activities must …
IMG ER: a system for microbial genome annotation expert review and curation
…, NN Ivanova, IMA Chen, K Chu, NC Kyrpides - …, 2009 - academic.oup.com
Motivation: A rapidly increasing number of microbial genomes are sequenced by organizations
worldwide and are eventually included into various public genome data resources. The …
worldwide and are eventually included into various public genome data resources. The …
[HTML][HTML] Insights into the phylogeny and coding potential of microbial dark matter
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However, …
blueprints for the evolutionary and functional diversity that shapes the biosphere. However, …
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
…, AR Kerlavage, DE Graham, NC Kyrpides… - Nature, 1997 - nature.com
Archaeoglobus fulgidus is the first sulphur-metabolizing organism to have its genome sequence
determined. Its genome of 2,178,400 base pairs contains 2,436 open reading frames (…
determined. Its genome of 2,178,400 base pairs contains 2,436 open reading frames (…
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
…, A Salamov, K Barry, N Mikhailova, NC Kyrpides… - Nature, 2007 - nature.com
… New insights into other important symbiotic functions including H 2 metabolism, CO 2 -reductive
acetogenesis and N 2 fixation are also provided by this first system-wide gene analysis …
acetogenesis and N 2 fixation are also provided by this first system-wide gene analysis …
IMG: the integrated microbial genomes database and comparative analysis system
The Integrated Microbial Genomes (IMG) system serves as a community resource for
comparative analysis of publicly available genomes in a comprehensive integrated context. IMG …
comparative analysis of publicly available genomes in a comprehensive integrated context. IMG …
[HTML][HTML] A unified catalog of 204,938 reference genomes from the human gut microbiome
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
[HTML][HTML] Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
Bacillus cereus is an opportunistic pathogen causing food poisoning manifested by diarrhoeal
or emetic syndromes 1 . It is closely related to the animal and human pathogen Bacillus …
or emetic syndromes 1 . It is closely related to the animal and human pathogen Bacillus …
[HTML][HTML] A genomic catalog of Earth's microbiomes
The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has
enabled insights into the ecology and evolution of environmental and host-associated …
enabled insights into the ecology and evolution of environmental and host-associated …