The genetic and epigenetic landscape of the Arabidopsis centromeres

…, B Jamge, C Lambing, P Kuo, N Yelina, N Hartwick… - Science, 2021 - science.org
… (D) Histograms of LTR sequence identity for centromeric ATHILA elements (n = 53) compared
with ATHILA outside of the centromeres (n = 58). Red dashed lines indicate mean values. (…

plasmidSPAdes: assembling plasmids from whole genome sequencing data

D Antipov, N Hartwick, M Shen, M Raiko… - …, 2016 - academic.oup.com
… annotated as ‘N’ or ‘N/A’ and, whenever possible, classified them as ‘N/A (plasmid)’, ‘…
putative plasmids annotated as ‘N/A’ or ‘N’ likely represent phages (labeled as ‘N/A (phage)’ or ‘…

[HTML][HTML] Underwater CAM photosynthesis elucidated by Isoetes genome

…, YM Huang, Z Li, MS Barker, NT Hartwick… - Nature …, 2021 - nature.com
To conserve water in arid environments, numerous plant lineages have independently evolved
Crassulacean Acid Metabolism (CAM). Interestingly, Isoetes, an aquatic lycophyte, can …

Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control

TP Michael, E Ernst, N Hartwick, P Chu… - Genome …, 2021 - genome.cshlp.org
Rootless plants in the genus Wolffia are some of the fastest growing known plants on Earth.
Wolffia have a reduced body plan, primarily multiplying through a budding type of asexual …

The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness

BW Abramson, M Novotny, NT Hartwick, K Colt… - Plant …, 2022 - academic.oup.com
The ability to trace every cell in some model organisms has led to the fundamental understanding
of development and cellular function. However, in plants the complexity of cell number, …

Clinical, autoimmune, and HLA characteristics of children diagnosed with type 1 diabetes before 5 years of age

EH Hathout, N Hartwick, OR Fagoaga… - …, 2003 - publications.aap.org
Background. Little is known about auxologic, autoimmune, and HLA characteristics specific
to children with early-onset diabetes (EOD). HLA subtypes have been shown to play an …

Genomics of turions from the Greater Duckweed reveal its pathways for dormancy and re‐emergence strategy

…, Y Liang, BW Abramson, K Colt, NT Hartwick… - New …, 2023 - Wiley Online Library
… In our analysis, we found the ratio between N and CP DNA content did not change while
there is a 2-fold decrease in MT DNA content in turions (Fig. S10). This result indicates that …

[HTML][HTML] Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding

J Kawash, K Colt, NT Hartwick, BW Abramson, N Vorsa… - Plos one, 2022 - journals.plos.org
… low-growing woody perennial native to North America that is both economically important
and … into early genomic selection in the domestication of a native North American berry crop. …

PanKmer: k-mer-based and reference-free pangenome analysis

AJ Aylward, S Petrus, A Mamerto, NT Hartwick… - …, 2023 - academic.oup.com
… The set κ of all possible canonical k-mers has size | κ | = 1 2 κ 4 , which is divided among
n segments κ 1 … κ n . Index construction is then divided into n subprocesses, each of …

Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation

…, BJ Cole, C Yu, JH Coomey, NT Hartwick… - New …, 2020 - Wiley Online Library
… (b–e) Hierarchical clustering was done on normalized period data to group the transcripts
into four unique clusters; n is the number of transcripts in each cluster. The boxes represent …