Whole genomes redefine the mutational landscape of pancreatic cancer

…, S Wani, PJ Wilson, E Markham, N Cloonan… - Nature, 2015 - nature.com
Pancreatic cancer remains one of the most lethal of malignancies and a major health burden.
We performed whole-genome sequencing and copy number variation (CNV) analysis of …

Genomic analyses identify molecular subtypes of pancreatic cancer

…, N Waddell, S Wood, Q Xu, PJ Wilson, N Cloonan… - Nature, 2016 - nature.com
Integrated genomic analysis of 456 pancreatic ductal adenocarcinomas identified 32 recurrently
mutated genes that aggregate into 10 pathways: KRAS, TGF-β, WNT, NOTCH, ROBO/…

Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes

…, K Nones, J Lynn Fink, A Christ, T Bruxner, N Cloonan… - Nature, 2012 - nature.com
Pancreatic cancer is a highly lethal malignancy with few effective therapies. We performed
exome sequencing and copy number analysis to define genomic aberrations in a …

Re‐thinking miRNA‐mRNA interactions: Intertwining issues confound target discovery

N Cloonan - Bioessays, 2015 - Wiley Online Library
Despite a library full of literature on miRNA biology, core issues relating to miRNA target
detection, biological effect, and mode of action remain controversial. This essay proposes that …

[HTML][HTML] Transcriptome content and dynamics at single-nucleotide resolution

N Cloonan, SM Grimmond - Genome biology, 2008 - Springer
Massively parallel short-tag sequencing of cDNA libraries-RNAseq-is being used to study
the dynamics and complexity of eukaryotic transcriptomes, giving new biological insights …

Stem cell transcriptome profiling via massive-scale mRNA sequencing

N Cloonan, ARR Forrest, G Kolle, BBA Gardiner… - Nature …, 2008 - nature.com
We developed a massive-scale RNA sequencing protocol, short quantitative random RNA
libraries or SQRL, to survey the complexity, dynamics and sequence content of transcriptomes …

The regulated retrotransposon transcriptome of mammalian cells

…, S Wani, C Plessy, KM Irvine, K Schroder, N Cloonan… - Nature …, 2009 - nature.com
Although repetitive elements pervade mammalian genomes, their overall contribution to
transcriptional activity is poorly defined. Here, as part of the FANTOM4 project, we report that 6–…

Increased inflammatory markers identified in the dorsolateral prefrontal cortex of individuals with schizophrenia

SG Fillman, N Cloonan, VS Catts, LC Miller… - Molecular …, 2013 - nature.com
Upregulation of the immune response may be involved in the pathogenesis of schizophrenia
with changes occurring in both peripheral blood and brain tissue. To date, microarray …

[HTML][HTML] MicroRNAs and their isomiRs function cooperatively to target common biological pathways

N Cloonan, S Wani, Q Xu, J Gu, K Lea, S Heater… - Genome biology, 2011 - Springer
Background Variants of microRNAs (miRNAs), called isomiRs, are commonly reported in
deep-sequencing studies; however, the functional significance of these variants remains …

Immunity to malaria after administration of ultra-low doses of red cells infected with Plasmodium falciparum

…, C Hirunpetcharat, C Rzepczyk, M Bryden, N Cloonan… - The Lancet, 2002 - thelancet.com
… Nicole Cloonan, BSc Nicole CloonanN Cloonen helped to plan and coordinate the study,
extracted DNA from the volunteers' blood samples, and did all the original diagnostic PCRs. …