… Cite this article Roosaare M, Puustusmaa M, Möls M, Vaher M, Remm M. PlasmidSeeker:
identification of known plasmids from bacterial whole genome sequencing reads. PeerJ 6:…

Endophytes are microbes and fungi that live inside plant tissues without damaging the host.
Herein we examine the dynamic changes in the endophytic bacterial community in potato (…

Background Fast, accurate and high-throughput identification of bacterial isolates is in great
demand. The present work was conducted to investigate the possibility of identifying isolates …

Plants contain endophytic bacteria, whose communities both influence plant growth and can
be an important source of probiotics. Here we used deep sequencing of a 16S rRNA gene …

… abundant type encodes for the complete signal peptide sequence together with a variable
length fragment of a pro-peptide, while the first exon of genes encoding type A, I1, I3, and M …

Microbes are found virtually everywhere on Earth, from the ocean floor and deep mines to
hot springs, even on our skin and in our gut. They are essential to life on our planet as the …

Background Fast, accurate and high-throughput detection of bacteria is in great demand.
The present work was conducted to investigate the possibility of identifying both known and …

The aim of this overview paper is to analyze the use of various landscape metrics and
landscape indices for the characterization of landscape structure and various processes at both …

… size is 10 m, we also used 10 m resolution for converting … (m) divided by the logarithm of
patch area (m2); (6) Contrast Weighted Edge Density (CWED) - equals the sum of the lengths (m…

We investigated scale dependence of landscape metrics and the relationship between land
use parameters and FRAGSTATS-based landscape metrics (edge density (ED), patch …