[HTML][HTML] GOnet: a tool for interactive Gene Ontology analysis
M Pomaznoy, B Ha, B Peters - BMC bioinformatics, 2018 - Springer
Background Biological interpretation of gene/protein lists resulting from -omics experiments
can be a complex task. A common approach consists of reviewing Gene Ontology (GO) …
can be a complex task. A common approach consists of reviewing Gene Ontology (GO) …
[HTML][HTML] Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach
N Battulin, VS Fishman, AM Mazur, M Pomaznoy… - Genome biology, 2015 - Springer
Background The three-dimensional organization of the genome is tightly connected to its
biological function. The Hi-C approach was recently introduced as a method that can be used …
biological function. The Hi-C approach was recently introduced as a method that can be used …
[HTML][HTML] Host transcriptomics as a tool to identify diagnostic and mechanistic immune signatures of tuberculosis
JG Burel, M Babor, M Pomaznoy… - Frontiers in …, 2019 - frontiersin.org
Tuberculosis (TB) is a major infectious disease worldwide, and is associated with several
challenges for control and eradication. First, more accurate diagnostic tools that better …
challenges for control and eradication. First, more accurate diagnostic tools that better …
Circulating T cell-monocyte complexes are markers of immune perturbations
JG Burel, M Pomaznoy, CS Lindestam Arlehamn… - Elife, 2019 - elifesciences.org
10.7554/eLife.46045.001 Our results highlight for the first time that a significant proportion of
cell doublets in flow cytometry, previously believed to be the result of technical artifacts and …
cell doublets in flow cytometry, previously believed to be the result of technical artifacts and …
HLA-DR marks recently divided antigen-specific effector CD4 T cells in active tuberculosis patients
…, A Crinklaw, M Pomaznoy… - The Journal of …, 2021 - journals.aai.org
… However, we expect the prevalence of circulating M. tuberculosis–specific effector T cells
to be increased in ATB, which is marked by a lack of control of M. tuberculosis and thus …
to be increased in ATB, which is marked by a lack of control of M. tuberculosis and thus …
The challenge of distinguishing cell–cell complexes from singlet cells in non‐imaging flow cytometry and single‐cell sorting
JG Burel, M Pomaznoy… - Cytometry Part …, 2020 - Wiley Online Library
Our recent work has highlighted that care needs to be taken when interpreting single cell data
originating from flow cytometry acquisition or cell sorting: We found that doublets of T cells …
originating from flow cytometry acquisition or cell sorting: We found that doublets of T cells …
Whole transcriptome profiling of adult and infective stages of the trematode Opisthorchis felineus
MY Pomaznoy, MD Logacheva, ND Young… - Parasitology …, 2016 - Elsevier
Opisthorchis felineus, the trematode belonging to the family Opisthorchiidae, is a causative
agent of the infection called opisthorchiasis or liver fluke infection. Being a close relative of …
agent of the infection called opisthorchiasis or liver fluke infection. Being a close relative of …
[HTML][HTML] Quantitative and qualitative perturbations of CD8+ MAITs in healthy Mycobacterium tuberculosis–infected individuals
CD8 T cells are considered important contributors to the immune response against
Mycobacterium tuberculosis, yet limited information is currently known regarding their specific …
Mycobacterium tuberculosis, yet limited information is currently known regarding their specific …
[HTML][HTML] A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy
…, F Soldevila, M Pomaznoy, M Babor… - JCI insight, 2021 - ncbi.nlm.nih.gov
The increased incidence of whooping cough worldwide suggests that current vaccination
against Bordetella pertussis infection has limitations in quality and duration of protection. The …
against Bordetella pertussis infection has limitations in quality and duration of protection. The …
Adult Opisthorchis felineus major protein fractions deduced from transcripts: Comparison with liver flukes Opisthorchis viverrini and Clonorchis sinensis
M Pomaznoy, S Tatkov, A Katokhin, D Afonnikov… - Experimental …, 2013 - Elsevier
The epidemiologically important liver flukes Opisthorchis felineus, Opisthorchis viverrini, and
Clonorchis sinensis are of interest to health professionals, epidemiologists, pharmacologists…
Clonorchis sinensis are of interest to health professionals, epidemiologists, pharmacologists…