[HTML][HTML] GOnet: a tool for interactive Gene Ontology analysis

M Pomaznoy, B Ha, B Peters - BMC bioinformatics, 2018 - Springer
Background Biological interpretation of gene/protein lists resulting from -omics experiments
can be a complex task. A common approach consists of reviewing Gene Ontology (GO) …

[HTML][HTML] Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach

N Battulin, VS Fishman, AM Mazur, M Pomaznoy… - Genome biology, 2015 - Springer
Background The three-dimensional organization of the genome is tightly connected to its
biological function. The Hi-C approach was recently introduced as a method that can be used …

[HTML][HTML] Host transcriptomics as a tool to identify diagnostic and mechanistic immune signatures of tuberculosis

JG Burel, M Babor, M Pomaznoy… - Frontiers in …, 2019 - frontiersin.org
Tuberculosis (TB) is a major infectious disease worldwide, and is associated with several
challenges for control and eradication. First, more accurate diagnostic tools that better …

Circulating T cell-monocyte complexes are markers of immune perturbations

JG Burel, M Pomaznoy, CS Lindestam Arlehamn… - Elife, 2019 - elifesciences.org
10.7554/eLife.46045.001 Our results highlight for the first time that a significant proportion of
cell doublets in flow cytometry, previously believed to be the result of technical artifacts and …

HLA-DR marks recently divided antigen-specific effector CD4 T cells in active tuberculosis patients

…, A Crinklaw, M Pomaznoy… - The Journal of …, 2021 - journals.aai.org
… However, we expect the prevalence of circulating M. tuberculosis–specific effector T cells
to be increased in ATB, which is marked by a lack of control of M. tuberculosis and thus …

The challenge of distinguishing cell–cell complexes from singlet cells in non‐imaging flow cytometry and single‐cell sorting

JG Burel, M Pomaznoy… - Cytometry Part …, 2020 - Wiley Online Library
Our recent work has highlighted that care needs to be taken when interpreting single cell data
originating from flow cytometry acquisition or cell sorting: We found that doublets of T cells …

Whole transcriptome profiling of adult and infective stages of the trematode Opisthorchis felineus

MY Pomaznoy, MD Logacheva, ND Young… - Parasitology …, 2016 - Elsevier
Opisthorchis felineus, the trematode belonging to the family Opisthorchiidae, is a causative
agent of the infection called opisthorchiasis or liver fluke infection. Being a close relative of …

[HTML][HTML] Quantitative and qualitative perturbations of CD8+ MAITs in healthy Mycobacterium tuberculosis–infected individuals

M Pomaznoy, R Kuan, M Lindvall, JG Burel… - …, 2020 - journals.aai.org
CD8 T cells are considered important contributors to the immune response against
Mycobacterium tuberculosis, yet limited information is currently known regarding their specific …

[HTML][HTML] A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy

…, F Soldevila, M Pomaznoy, M Babor… - JCI insight, 2021 - ncbi.nlm.nih.gov
The increased incidence of whooping cough worldwide suggests that current vaccination
against Bordetella pertussis infection has limitations in quality and duration of protection. The …

Adult Opisthorchis felineus major protein fractions deduced from transcripts: Comparison with liver flukes Opisthorchis viverrini and Clonorchis sinensis

M Pomaznoy, S Tatkov, A Katokhin, D Afonnikov… - Experimental …, 2013 - Elsevier
The epidemiologically important liver flukes Opisthorchis felineus, Opisthorchis viverrini, and
Clonorchis sinensis are of interest to health professionals, epidemiologists, pharmacologists…