Genetic consequences of range expansions
… Although a full description of the properties of the coalescent process is out of the scope
of the present review and can be found elsewhere (see eg, Hudson 1990, Wakeley 2009), it …
of the present review and can be found elsewhere (see eg, Hudson 1990, Wakeley 2009), it …
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective
M Foll, O Gaggiotti - Genetics, 2008 - academic.oup.com
… Because here values of F IS are not of immediate interest, we propose an intermediate
solution: we do not estimate F IS coefficients but we incorporate the full uncertainty on F IS by …
solution: we do not estimate F IS coefficients but we incorporate the full uncertainty on F IS by …
[HTML][HTML] A proteomics sample metadata representation for multiomics integration and big data analysis
…, M Locard-Paulet, M Turewicz, M Eisenacher… - Nature …, 2021 - nature.com
… The full specification document describing all aspects of MAGE-TAB-Proteomics version
1.0, the current implementations, as well as application examples, is available at the PSI …
1.0, the current implementations, as well as application examples, is available at the PSI …
Thinking too positive? Revisiting current methods of population genetic selection inference
C Bank, GB Ewing, A Ferrer-Admettla, M Foll… - Trends in Genetics, 2014 - cell.com
In the age of next-generation sequencing, the availability of increasing amounts and improved
quality of data at decreasing cost ought to allow for a better understanding of how natural …
quality of data at decreasing cost ought to allow for a better understanding of how natural …
[HTML][HTML] Robust demographic inference from genomic and SNP data
… to 500 diploids and M changed due to immigration rates m that could differ for each island. …
More powerful full likelihood approaches explicitly take into account linkage disequilibrium (…
More powerful full likelihood approaches explicitly take into account linkage disequilibrium (…
Prediction of acute myeloid leukaemia risk in healthy individuals
The incidence of acute myeloid leukaemia (AML) increases with age and mortality exceeds
90% when diagnosed after age 65. Most cases arise without any detectable early symptoms …
90% when diagnosed after age 65. Most cases arise without any detectable early symptoms …
[HTML][HTML] Detecting loci under selection in a hierarchically structured population
L Excoffier, T Hofer, M Foll - Heredity, 2009 - nature.com
… Each generation and in each deme, a proportion m 1 of the 2N gene copies are immigrants
from other demes belonging to the same group and a proportion m 2 come from demes …
from other demes belonging to the same group and a proportion m 2 come from demes …
[HTML][HTML] Approximate bayesian computation
…, E Numminen, J Corander, M Foll… - PLoS computational …, 2013 - journals.plos.org
… Figure 3 shows the posterior probabilities obtained by ABC and a large using either the
summary statistic combined with ( and ) or the full data sequence. These are compared with the …
summary statistic combined with ( and ) or the full data sequence. These are compared with the …
Fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
L Excoffier, M Foll - Bioinformatics, 2011 - academic.oup.com
… We have retained full compatibility with simcoal2 parameter files, and former input files
should run without modifications with fastsimcoal. Additional options can now be explicitly given …
should run without modifications with fastsimcoal. Additional options can now be explicitly given …
Identifying the environmental factors that determine the genetic structure of populations
M Foll, O Gaggiotti - Genetics, 2006 - academic.oup.com
… As opposed to the multivariate Mantel test, which uses a summary statistic (pairwise genetic
distance), our method is model based and makes full use of the data (allele frequencies). …
distance), our method is model based and makes full use of the data (allele frequencies). …