User profiles for M. Firdaus-Raih

Mohd Firdaus Raih

Universiti Kebangsaan Malaysia
Verified email at mfrlab.org
Cited by 988

A Burkholderia pseudomallei Toxin Inhibits Helicase Activity of Translation Factor eIF4A

…, PJ Artymiuk, PJ Baker, M Bokori-Brown… - Science, 2011 - science.org
The structure of BPSL1549, a protein of unknown function from Burkholderia pseudomallei,
reveals a similarity to Escherichia coli cytotoxic necrotizing factor 1. We found that BPSL1549 …

[HTML][HTML] The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties

HYY Yap, YH Chooi, M Firdaus-Raih, SY Fung, ST Ng… - BMC genomics, 2014 - Springer
Background The sclerotium of Lignosus rhinocerotis (Cooke) Ryvarden or Tiger milk
mushroom (Polyporales, Basidiomycota) is a valuable folk medicine for indigenous peoples in …

[HTML][HTML] The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat

M Firdaus-Raih, NHF Hashim, I Bharudin… - PLoS …, 2018 - journals.plos.org
Extremely low temperatures present various challenges to life that include ice formation and
effects on metabolic capacity. Psyhcrophilic microorganisms typically have an array of …

Reconstructing gene regulatory networks from knock-out data using Gaussian Noise Model and Pearson Correlation Coefficient

…, SM Arif, S Zainudin, M Firdaus-Raih - … biology and chemistry, 2015 - Elsevier
A gene regulatory network (GRN) is a large and complex network consisting of interacting
elements that, over time, affect each other’s state. The dynamics of complex gene regulatory …

[HTML][HTML] Proteins of unknown function in the Protein Data Bank (PDB): an inventory of true uncharacterized proteins and computational tools for their analysis

N Nadzirin, M Firdaus-Raih - International journal of molecular sciences, 2012 - mdpi.com
Proteins of uncharacterized functions form a large part of many of the currently available
biological databases and this situation exists even in the Protein Data Bank (PDB). Our analysis …

SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures

…, P Willett, PJ Artymiuk, M Firdaus-Raih - Nucleic acids …, 2012 - academic.oup.com
… Specifically, if we let S, M and E denote the start, middle and end, respectively, of a vector,
then the graph edges contain five parts, these being the SS, SE, ES, EE and MM distances (…

[HTML][HTML] Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data

…, R Rosli, TV Tatarinova, M Hogan, M Firdaus-Raih… - BMC …, 2017 - Springer
Background Gene prediction is one of the most important steps in the genome annotation
process. A large number of software tools and pipelines developed by various computing …

[HTML][HTML] Evidence-based gene models for structural and functional annotations of the oil palm genome

…, M Triska, V Solovyev, M Firdaus-Raih… - Biology direct, 2017 - Springer
Background Oil palm is an important source of edible oil. The importance of the crop, as well
as its long breeding cycle (10-12 years) has led to the sequencing of its genome in 2013 to …

Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning

…, EI Ramlan, M Firdaus-Raih - Nucleic acids research, 2019 - academic.oup.com
A common drug repositioning strategy is the re-application of an existing drug to address
alternative targets. A crucial aspect to enable such repurposing is that the drug's binding site on …

Dissecting the Biology of Rafflesia Species: Current Progress and Future Directions Made Possible with High-Throughput Sequencing Data

…, A Latiff, M Firdaus-Raih… - Plant and Cell …, 2023 - academic.oup.com
The angiosperm Rafflesia exhibits a unique biology, including a growth strategy that involves
endophytic parasitism of a specific host, with only the gigantic flower externally visible. The …