[PDF][PDF] Robust transcriptional indicators of immune cell death revealed by spatiotemporal transcriptome analyses

…, UJ Phukan, VM González, M Bernardo-Faura, M Valls… - Molecular Plant, 2022 - cell.com
Recognition of a pathogen by the plant immune system often triggers a form of regulated
cell death traditionally known as the hypersensitive response (HR). This type of cell death …

MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis

…, V Pliaka, M Bernardo-Faura, M Rinas… - Proceedings of the …, 2019 - National Acad Sciences
Dysregulation of signaling pathways in multiple sclerosis (MS) can be analyzed by
phosphoproteomics in peripheral blood mononuclear cells (PBMCs). We performed in vitro kinetic …

[HTML][HTML] Efficient randomization of biological networks while preserving functional characterization of individual nodes

F Iorio, M Bernardo-Faura, A Gobbi, T Cokelaer… - BMC …, 2016 - Springer
Background Networks are popular and powerful tools to describe and model biological
processes. Many computational methods have been developed to infer biological networks from …

[HTML][HTML] Multi-parametric analysis and modeling of relationships between mitochondrial morphology and apoptosis

Y Reis, M Bernardo-Faura, D Richter, T Wolf, B Brors… - PLoS …, 2012 - journals.plos.org
… Contributed equally to this work with: Marti Bernardo-Faura, … Contributed equally to this work
with: Marti Bernardo-Faura, … related to either Bax or ΔΨ m . Instead, FL modeling proposes a …

Phosphoproteomic analyses reveal novel cross‐modulation mechanisms between two signaling pathways in yeast

S Vaga, M BernardoFaura, T Cokelaer… - Molecular systems …, 2014 - embopress.org
Cells respond to environmental stimuli via specialized signaling pathways. Concurrent
stimuli trigger multiple pathways that integrate information, predominantly via protein …

Signaling networks in MS: a systems-based approach to developing new pharmacological therapies

E Kotelnikova, M Bernardo-Faura… - Multiple Sclerosis …, 2015 - journals.sagepub.com
The pathogenesis of multiple sclerosis (MS) involves alterations to multiple pathways and
processes, which represent a significant challenge for developing more-effective therapies. …

[HTML][HTML] An artificial miRNA system reveals that relative contribution of translational inhibition to miRNA-mediated regulation depends on environmental and …

P Von Born, M Bernardo-Faura, I Rubio-Somoza - PLoS One, 2018 - journals.plos.org
Development and fitness of any organism rely on properly controlled gene expression. This
is especially true for plants, as their development is determined by both internal and external …

[HTML][HTML] Protease activities triggered by Ralstonia solanacearum infection in susceptible and tolerant tomato lines

M Planas-Marques, M Bernardo-Faura, J Paulus… - Molecular & Cellular …, 2018 - ASBMB
Activity-based protein profiling (ABPP) is a powerful proteomic technique to display protein
activities in a proteome. It is based on the use of small molecular probes that react with the …

[HTML][HTML] Data-derived modeling characterizes plasticity of MAPK signaling in melanoma

M Bernardo-Faura, S Massen, CS Falk… - PLoS computational …, 2014 - journals.plos.org
The majority of melanomas have been shown to harbor somatic mutations in the RAS-RAF-MEK-MAPK
and PI3K-AKT pathways, which play a major role in regulation of proliferation …

[HTML][HTML] Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis

M Bernardo-Faura, M Rinas, J Wirbel, I Pertsovskaya… - Genome Medicine, 2021 - Springer
Background Multiple sclerosis (MS) is a major health problem, leading to a significant disability
and patient suffering. Although chronic activation of the immune system is a hallmark of …