User profiles for M. Akeson

Mark Akeson

Professor of Biomolecular Engineering, UC Santa Cruz
Verified email at soe.ucsc.edu
Cited by 16601

Three decades of nanopore sequencing

D Deamer, M Akeson, D Branton - Nature biotechnology, 2016 - nature.com
A long-held goal in sequencing has been to use a voltage-biased nanoscale pore in a
membrane to measure the passage of a linear, single-stranded (ss) DNA or RNA molecule …

Nanopores and nucleic acids: prospects for ultrarapid sequencing

DW Deamer, M Akeson - Trends in biotechnology, 2000 - cell.com
DNA and RNA molecules can be detected as they are driven through a nanopore by an
applied electric field at rates ranging from several hundred microseconds to a few milliseconds …

Nanopore sensors for nucleic acid analysis

JJ Nakane, M Akeson, A Marziali - Journal of Physics …, 2003 - iopscience.iop.org
… [51] Akeson M et al 1999 Microsecond time-scale discrimination among polycytidylic acid,
polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA …

[HTML][HTML] The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

M Jain, HE Olsen, B Paten, M Akeson - Genome biology, 2016 - Springer
… More recently, reads of more than 150 kb have routinely been achieved with the MinION (Akeson,
unpublished findings), and this is expected to improve in the next few months. …

[PDF][PDF] Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA …

M Akeson, D Branton, JJ Kasianowicz, E Brandin… - Biophysical journal, 1999 - cell.com
… The reaction was stopped by adding 100 μl 3 M sodium acetate and 50 μl 10% glacial
acetic acid. The RNA was precipitated in ethanol, re-dissolved in TE buffer, then separated by …

Improved data analysis for the MinION nanopore sequencer

…, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson - Nature …, 2015 - nature.com
Speed, single-base sensitivity and long read lengths make nanopores a promising technology
for high-throughput sequencing. We evaluated and optimized the performance of the …

[HTML][HTML] Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

…, S Salama, D Haussler, RE Green, M Akeson… - Nature …, 2020 - nature.com
De novo assembly of a human genome using nanopore long-read sequences has been
reported, but it used more than 150,000 CPU hours and weeks of wall-clock time. To enable …

Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision

…, H Rashid, CE Lam, K Karplus, M Akeson - Nature …, 2012 - nature.com
An emerging DNA sequencing technique uses protein or solid-state pores to analyze individual
strands as they are driven in single-file order past a nanoscale sensor 1 , 2 , 3 . However…

Nanopore native RNA sequencing of a human poly (A) transcriptome

…, JT Simpson, HE Olsen, AN Brooks, M Akeson… - Nature …, 2019 - nature.com
High-throughput complementary DNA sequencing technologies have advanced our
understanding of transcriptome complexity and regulation. However, these methods lose …

Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel

…, H Olsen, D Deamer, D Haussler, M Akeson - Nature …, 2001 - nature.com
RNA and DNA strands produce ionic current signatures when driven through an α-hemolysin
channel by an applied voltage. Here we combine this nanopore detector with a support …