User profiles for M. P. Joachimiak
 | marcin p. joachimiakComputational Biologist, Lawrence Berkeley National Laboratory Verified email at lbl.gov Cited by 6319 |
How many rare diseases are there?
A lack of robust knowledge of the number of rare diseases and the number of people affected
by them limits the development of approaches to ameliorate the substantial cumulative …
by them limits the development of approaches to ameliorate the substantial cumulative …
[HTML][HTML] Zinc against COVID-19? Symptom surveillance and deficiency risk groups
MP Joachimiak - PLoS neglected tropical diseases, 2021 - journals.plos.org
A wide variety of symptoms is associated with Severe Acute Respiratory Syndrome Coronavirus
2 (SARS-CoV-2) infection, and these symptoms can overlap with other conditions and …
2 (SARS-CoV-2) infection, and these symptoms can overlap with other conditions and …
[HTML][HTML] KBase: the United States department of energy systems biology knowledgebase
Although similar integrative tools exist (Supplementary Note 2), no other open platform
shares all KBase’s features, which include the following:(i) comprehensive support for data …
shares all KBase’s features, which include the following:(i) comprehensive support for data …
[HTML][HTML] The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
…, CS Miller, H Li, ST Mashiyama, MP Joachimiak… - PLoS …, 2007 - journals.plos.org
Metagenomics projects based on shotgun sequencing of populations of micro-organisms
yield insight into protein families. We used sequence similarity clustering to explore proteins …
yield insight into protein families. We used sequence similarity clustering to explore proteins …
[PDF][PDF] Effects of genetic variation on the E. coli host-circuit interface
S Cardinale, MP Joachimiak, AP Arkin - Cell reports, 2013 - cell.com
Predictable operation of engineered biological circuitry requires the knowledge of host factors
that compete or interfere with designed function. Here, we perform a detailed analysis of …
that compete or interfere with designed function. Here, we perform a detailed analysis of …
MicrobesOnline: an integrated portal for comparative and functional genomics
Since 2003, MicrobesOnline ( http://www.microbesonline.org ) has been providing a community
resource for comparative and functional genome analysis. The portal includes over 1000 …
resource for comparative and functional genome analysis. The portal includes over 1000 …
[HTML][HTML] Expression profiling of the schizont and trophozoite stages of Plasmodium falciparumwith a long-oligonucleotide microarray
Background The worldwide persistence of drug-resistant Plasmodium falciparum, the most
lethal variety of human malaria, is a global health concern. The P. falciparum sequencing …
lethal variety of human malaria, is a global health concern. The P. falciparum sequencing …
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning
Motivation Creating knowledge bases and ontologies is a time consuming task that relies
on manual curation. AI/NLP approaches can assist expert curators in populating these …
on manual curation. AI/NLP approaches can assist expert curators in populating these …
[PDF][PDF] KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response
Integrated, up-to-date data about SARS-CoV-2 and COVID-19 is crucial for the ongoing
response to the COVID-19 pandemic by the biomedical research community. While rich …
response to the COVID-19 pandemic by the biomedical research community. While rich …
[HTML][HTML] JColorGrid: software for the visualization of biological measurements
MP Joachimiak, JL Weisman, BCH May - BMC bioinformatics, 2006 - Springer
Background Two-dimensional data colourings are an effective medium by which to represent
three-dimensional data in two dimensions. Such "color-grid" representations have found …
three-dimensional data in two dimensions. Such "color-grid" representations have found …