[PDF][PDF] Clonal decomposition and DNA replication states defined by scaled single-cell genome sequencing

…, F Kabeer, TR de Algara, SR Lee, MJ Taghiyar… - Cell, 2019 - cell.com
Accurate measurement of clonal genotypes, mutational processes, and replication states
from individual tumor-cell genomes will facilitate improved understanding of tumor evolution. …

flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification

M Malek, MJ Taghiyar, L Chong, G Finak… - …, 2014 - academic.oup.com
flowDensity facilitates reproducible, high-throughput analysis of flow cytometry data by
automating a predefined manual gating approach. The algorithm is based on a sequential …

Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

…, F Kabeer, TR de Algara, SR Lee, MJ Taghiyar… - BioRxiv, 2018 - biorxiv.org
Essential features of cancer tissue cellular heterogeneity such as negatively selected
genome topologies, sub-clonal mutation patterns and genome replication states can only …

flowCL: ontology-based cell population labelling in flow cytometry

…, R Droumeva, R Gottardo, A Jalali, MJ Taghiyar… - …, 2015 - academic.oup.com
Motivation: Finding one or more cell populations of interest, such as those correlating to a
specific disease, is critical when analysing flow cytometry data. However, labelling of cell …

Relay selection with imperfect CSI in bidirectional cooperative networks

MJ Taghiyar, S Muhaidat, J Liang… - IEEE Communications …, 2011 - ieeexplore.ieee.org
We study the performance of bidirectional multi-relay cooperative networks in the presence
of imperfect channel state information by means of the correlation coefficient of the estimated …

On the performance of pilot symbol assisted modulation for cooperative systems with imperfect channel estimation

MJ Taghiyar, S Muhaidat, J Liang - 2010 IEEE Wireless …, 2010 - ieeexplore.ieee.org
In this paper, we analyze the impact of imperfect channel estimation on the performance of
pilot symbol assisted modulation (PSAM) used in a relay communication system with …

Kronos: a workflow assembler for genome analytics and informatics

MJ Taghiyar, J Rosner, D Grewal, BM Grande… - …, 2017 - academic.oup.com
Background: The field of next-generation sequencing informatics has matured to a point
where algorithmic advances in sequence alignment and individual feature detection methods …

Max–min relay selection in bidirectional cooperative networks with imperfect channel estimation

MJ Taghiyar, S Muhaidat, J Liang - IET communications, 2012 - IET
The authors study the performance of wireless bidirectional relay-assisted networks in the
presence of imperfect channel state information, where two end-source terminals S1 and S2 …

[PDF][PDF] On pilot-symbol-assisted cooperative systems with cascaded Rayleigh and Rayleigh fading channels with imperfect CSI

MJ Taghiyar, S Muhaidat, J Liang - Multidisciplinary Journals in …, 2010 - cyberjournals.com
In this paper, we analyze the impact of imperfect channel estimation on the performance of
pilot symbol assisted modulation (PSAM) scheme used in a cooperative communication …

[PDF][PDF] Analysis of randomness of runs and its application for statistical tests

M Dakhilalian, EM Jazi, MJ Taghiyar… - International Journal of …, 2009 - dakhilalian.iut.ac.ir
Statistical Tests are suitable means for analyzing properties of pseudorandom sequences,
specifically in cryptography systems. Accordingly, various statistical tests have been proposed …