User profiles for M. H. Medema
Marnix MedemaProfessor of Bioinformatics at Wageningen University Verified email at wur.nl Cited by 27428 |
[HTML][HTML] Towards the sustainable discovery and development of new antibiotics
An ever-increasing demand for novel antimicrobials to treat life-threatening infections caused
by the global spread of multidrug-resistant bacterial pathogens stands in stark contrast to …
by the global spread of multidrug-resistant bacterial pathogens stands in stark contrast to …
Computational approaches to natural product discovery
MH Medema, MA Fischbach - Nature chemical biology, 2015 - nature.com
Starting with the earliest Streptomyces genome sequences, the promise of natural product
genome mining has been captivating: genomics and bioinformatics would transform …
genome mining has been captivating: genomics and bioinformatics would transform …
Ecology and genomics of Actinobacteria: new concepts for natural product discovery
Actinobacteria constitute a highly diverse bacterial phylum with an unrivalled metabolic
versatility. They produce most of the clinically used antibiotics and a plethora of other natural …
versatility. They produce most of the clinically used antibiotics and a plethora of other natural …
antiSMASH 6.0: improving cluster detection and comparison capabilities
…, GP Van Wezel, MH Medema… - Nucleic acids …, 2021 - academic.oup.com
Many microorganisms produce natural products that form the basis of antimicrobials,
antivirals, and other drugs. Genome mining is routinely used to complement screening-based …
antivirals, and other drugs. Genome mining is routinely used to complement screening-based …
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
Secondary metabolites produced by bacteria and fungi are an important source of
antimicrobials and other bioactive compounds. In recent years, genome mining has seen broad …
antimicrobials and other bioactive compounds. In recent years, genome mining has seen broad …
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
Microbial secondary metabolism constitutes a rich source of antibiotics, chemotherapeutics,
insecticides and other high-value chemicals. Genome mining of gene clusters that encode …
insecticides and other high-value chemicals. Genome mining of gene clusters that encode …
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
Microorganisms produce small bioactive compounds as part of their secondary or specialised
metabolism. Often, such metabolites have antimicrobial, anticancer, antifungal, antiviral or …
metabolism. Often, such metabolites have antimicrobial, anticancer, antifungal, antiviral or …
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
Bacterial and fungal secondary metabolism is a rich source of novel bioactive compounds
with potential pharmaceutical applications as antibiotics, anti-tumor drugs or cholesterol-…
with potential pharmaceutical applications as antibiotics, anti-tumor drugs or cholesterol-…
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
… Medema, antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary
identification, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W36–W41…
identification, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W36–W41…
Structure and function of the global topsoil microbiome
Soils harbour some of the most diverse microbiomes on Earth and are essential for both
nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model the …
nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model the …