We describe the construction and analysis of a genome-scale metabolic model of Arabidopsis
(Arabidopsis thaliana) primarily derived from the annotations in the Aracyc database. We …

Although leaves have to accommodate markedly different metabolic flux patterns in the light
and the dark, models of leaf metabolism based on flux-balance analysis ( FBA ) have so far …

… mg−1 Chl and then recalculated, decrementing light down to 900 μmol h−1 mg−1 Chl, at which
… light was increased incrementally back up to the initial value of 1500 μmol h−1 mg−1 Chl. …

… and Schwender, 2011), and is based on varying the flux of a generic ATPase in the model
until the carbon consumed by the model matches that measured experimentally (Poolman et al…

… All values are in μmol mg −1 dry weight and are means ± sd from four replicates. Values
indicated in boldface are significantly different (Student’s t test, P < 0.05) from the corresponding …

We describe the construction and analysis of a genome-scale metabolic model representing
a developing leaf cell of rice (Oryza sativa) primarily derived from the annotations in the …

Motivation: Metabolic modelling provides a mathematically rigorous basis for system-level
analysis of biochemical networks. However, the growing sizes of metabolic models can lead …

… We achieved a maximum fatty alcohol production of 460 mg/L in ZFM7 strain without ybbO
overexpression, which was 3.83-fold higher than in the control strain and 773 mg/L of fatty …

ScrumPy is a software package used for the definition and analysis of metabolic models. It
is written using the Python programming language that is also used as a user interface. …

Tomato (Solanum lycopersicum L.) has been studied extensively due to its high economic
value in the market, and high content in health‐promoting antioxidant compounds. Tomato is …