User profiles for L. Salmela

Luci Fuscaldi Teixeira-Salmela

- Verified email at ufmg.br - Cited by 10906

Leena Salmela

- Verified email at cs.helsinki.fi - Cited by 2244

Lauri Salmela

- Verified email at tuni.fi - Cited by 669

Machine learning and applications in ultrafast photonics

G Genty, L Salmela, JM Dudley, D Brunner… - Nature …, 2021 - nature.com
Recent years have seen the rapid growth and development of the field of smart photonics,
where machine-learning algorithms are being matched to optical systems to add new …

LoRDEC: accurate and efficient long read error correction

L Salmela, E Rivals - Bioinformatics, 2014 - academic.oup.com
Motivation: PacBio single molecule real-time sequencing is a third-generation sequencing
technique producing long reads, with comparatively lower throughput and higher error rate. …

[HTML][HTML] The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

V Ahola, R Lehtonen, P Somervuo, L Salmela… - Nature …, 2014 - nature.com
Previous studies have reported that chromosome synteny in Lepidoptera has been well
conserved, yet the number of haploid chromosomes varies widely from 5 to 223. Here we report …

Correcting errors in short reads by multiple alignments

L Salmela, J Schröder - Bioinformatics, 2011 - academic.oup.com
… In the worst case, the k-mer neighbourhood of each read contains L reads where L is the
limit on the size of the k-mer neighbourhoods. We use each read as a base read, and thus …

Predicting ultrafast nonlinear dynamics in fibre optics with a recurrent neural network

L Salmela, N Tsipinakis, A Foi, C Billet… - Nature machine …, 2021 - nature.com
The propagation of ultrashort pulses in optical fibre plays a central role in the development of
light sources and photonic technologies, with applications from fundamental studies of light…

Comparison of rocuronium and suxamethonium for use during rapid sequence induction of anaesthesia

KC McCourt, L Salmela, RK Mirakhur, M Carroll… - …, 1998 - Wiley Online Library
This study was designed to compare the tracheal intubating conditions during a rapid
sequence induction of anaesthesia using rocuronium 0.6 (n = 61) or 1.0 mg.kg −1 (n = 130) or …

Accurate self-correction of errors in long reads using de Bruijn graphs

L Salmela, R Walve, E Rivals, E Ukkonen - Bioinformatics, 2017 - academic.oup.com
… Therefore, C = i is distributed according to the binomial distribution Bin ( r i , ( i − k + 1 ) /
G ) (independence of locations of exact regions is assumed), and the expected coverage of a …

Correction of sequencing errors in a mixed set of reads

L Salmela - Bioinformatics, 2010 - academic.oup.com
… and let us denote these lengths by l 1 , l 2 ,…, l r . Let the number of reads of length l i be k i
. … We will use W m,i to denote the contribution of reads of length l i to the weight of a node at …

[HTML][HTML] Machine learning analysis of extreme events in optical fibre modulation instability

M Närhi, L Salmela, J Toivonen, C Billet… - Nature …, 2018 - nature.com
A central research area in nonlinear science is the study of instabilities that drive extreme
events. Unfortunately, techniques for measuring such phenomena often provide only partial …

Fast scaffolding with small independent mixed integer programs

L Salmela, V Mäkinen, N Välimäki, J Ylinen… - …, 2011 - academic.oup.com
… Let L be an estimate of the upper bound of possible scaffold length (eg an estimated upper
… A good choice for C is 2L as x i ≤L and x j ≤L. Similarly, we get the relaxed constraints for …