User profiles for L. Maretty

Lasse Maretty

Aarhus University
Verified email at clin.au.dk
Cited by 1247

[HTML][HTML] Next-generation biology: sequencing and data analysis approaches for non-model organisms

…, J Ramos-Madrigal, JA Sibbesen, L Maretty… - Marine genomics, 2016 - Elsevier
As sequencing technologies become more affordable, it is now realistic to propose studying
the evolutionary history of virtually any organism on a genomic scale. However, when …

[HTML][HTML] An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer

…, E Christensen, M Sokac, NJ Birkbak, L Maretty… - Nature …, 2021 - nature.com
The molecular landscape in non-muscle-invasive bladder cancer (NMIBC) is characterized
by large biological heterogeneity with variable clinical outcomes. Here, we perform an …

[HTML][HTML] Circular DNA elements of chromosomal origin are common in healthy human somatic tissue

…, MR Sailani, JF Halling, P Plomgaard, L Maretty… - Nature …, 2018 - nature.com
The human genome is generally organized into stable chromosomes, and only tumor cells
are known to accumulate kilobase (kb)-sized extrachromosomal circular DNA elements (…

Metallothionein‐I+ II in neuroprotection

…, DS Pedersen, AD Skjolding, C Hempel, L Maretty… - Biofactors, 2009 - Wiley Online Library
Metallothionein (MT)‐I+II synthesis is induced in the central nervous system (CNS) in response
to practically any pathogen or disorder, where it is increased mainly in reactive glia. MT‐I…

[HTML][HTML] Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

L Maretty, JM Jensen, B Petersen, JA Sibbesen, S Liu… - Nature, 2017 - nature.com
Hundreds of thousands of human genomes are now being sequenced to characterize genetic
variation and use this information to augment association mapping studies of complex …

[HTML][HTML] Bayesian transcriptome assembly

L Maretty, JA Sibbesen, A Krogh - Genome biology, 2014 - Springer
RNA sequencing allows for simultaneous transcript discovery and quantification, but
reconstructing complete transcripts from such data remains difficult. Here, we introduce …

[HTML][HTML] Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads

I Prada-Luengo, A Krogh, L Maretty, B Regenberg - BMC bioinformatics, 2019 - Springer
Background Circular DNA has recently been identified across different species including
human normal and cancerous tissue, but short-read mappers are unable to align many of the …

Accurate genotyping across variant classes and lengths using variant graphs

JA Sibbesen, L Maretty… - Nature …, 2018 - nature.com
Genotype estimates from short-read sequencing data are typically based on the alignment
of reads to a linear reference, but reads originating from more complex variants (for example, …

Facile photochemical synthesis and characterization of highly fluorescent silver nanoparticles

L Maretti, PS Billone, Y Liu… - Journal of the American …, 2009 - ACS Publications
Highly fluorescent silver nanoparticles (AgFNP) have been prepared by a facile
photochemical method, yielding these materials in just a few minutes and with excellent long-term …

Unsupervised detection of fragment length signatures of circulating tumor DNA using non-negative matrix factorization

…, M Borre, CL Andersen, KD Sørensen, L Maretty… - Elife, 2022 - elifesciences.org
Sequencing of cell-free DNA (cfDNA) is currently being used to detect cancer by searching
both for mutational and non-mutational alterations. Recent work has shown that the length …