[HTML][HTML] Inferring population size changes with sequence and SNP data: lessons from human bottlenecks

LM Gattepaille, M Jakobsson, MGB Blum - Heredity, 2013 - nature.com
Reconstructing historical variation of population size from sequence and single-nucleotide
polymorphism (SNP) data is valuable for understanding the evolutionary history of species. …

Genomic variation in seven Khoe-San groups reveals adaptation and complex African history

CM Schlebusch, P Skoglund, P Sjödin, LM Gattepaille… - Science, 2012 - science.org
The history of click-speaking Khoe-San, and African populations in general, remains poorly
understood. We genotyped ∼2.3 million single-nucleotide polymorphisms in 220 southern …

Human adaptation to arsenic-rich environments

CM Schlebusch, LM Gattepaille… - Molecular biology …, 2015 - academic.oup.com
Adaptation drives genomic changes; however, evidence of specific adaptations in humans
remains limited. We found that inhabitants of the northern Argentinean Andes, an arid region …

Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens

…, AE Sjöstrand, J Xu, LM Gattepaille… - Molecular biology …, 2020 - academic.oup.com
The southern African indigenous Khoe-San populations harbor the most divergent lineages
of all living peoples. Exploring their genomes is key to understanding deep human history. …

[HTML][HTML] Disproportionality analysis for pharmacovigilance signal detection in small databases or subsets: recommendations for limiting false-positive associations

O Caster, Y Aoki, LM Gattepaille, B Grundmark - Drug Safety, 2020 - Springer
Introduction Uncovering safety signals through the collection and assessment of individual
case reports remains a core pharmacovigilance activity. Despite the widespread use of …

Demographic inferences using short‐read genomic data in an approximate Bayesian computation framework: In silico evaluation of power, biases and proof of …

ABA Shafer, LM Gattepaille, REA Stewart… - Molecular …, 2015 - Wiley Online Library
Approximate Bayesian computation ( ABC ) is a powerful tool for model‐based inference of
demographic histories from large genetic data sets. For most organisms, its implementation …

[HTML][HTML] Robustness analysis and behavior discrimination in enzymatic reaction networks

A Donzé, E Fanchon, LM Gattepaille, O Maler… - PloS one, 2011 - journals.plos.org
Characterizing the behavior and robustness of enzymatic networks with numerous variables
and unknown parameter values is a major challenge in biology, especially when some …

Combining markers into haplotypes can improve population structure inference

LM Gattepaille, M Jakobsson - Genetics, 2012 - academic.oup.com
High-throughput genotyping and sequencing technologies can generate dense sets of genetic
markers for large numbers of individuals. For most species, these data will contain many …

[HTML][HTML] Prospective evaluation of adverse event recognition systems in Twitter: results from the Web-RADR project

LM Gattepaille, S Hedfors Vidlin, T Bergvall, CE Pierce… - Drug safety, 2020 - Springer
Introduction A large number of studies on systems to detect and sometimes normalize adverse
events (AEs) in social media have been published, but evidence of their practical utility is …

[HTML][HTML] Adverse events in twitter-development of a benchmark reference dataset: results from IMI WEB-RADR

J Dietrich, LM Gattepaille, BA Grum, L Jiri, M Lerch… - Drug safety, 2020 - Springer
Introduction and Objective Social media has been suggested as a source for safety information,
supplementing existing safety surveillance data sources. This article summarises the …